| |
Pst (93–210)
|
Psh (93TX-2)
|
Pst 104E 137A-
|
Pst 2 K-41-Yr9
|
Pst-CY32
|
|---|
|
Assembly statistics
|
|
Genome size in contigs (bp)
|
84,627,802
|
77,368,122
|
83,355,616
|
79,310,008
|
115,495,157
|
|
GC-content (%)
|
44.39
|
44.40
|
44.40
|
44.43
|
44.76
|
|
Number of contigs
|
493
|
562
|
156
|
17,295
|
10,913
|
|
Number of contigs > 100 kb
|
243
|
263
|
93
|
3
|
25
|
|
Contig N50
|
83
|
110
|
23
|
1320
|
1434
|
|
Contig N50 length (bp)
|
295,440
|
218,468
|
1,304,018
|
17,361
|
21,648
|
|
Mean contig size (bp)
|
171,659
|
137,666
|
534,331
|
4586
|
10,583
|
|
Annotation statistics
|
|
Protein-coding genes
|
16,513
|
15,976
|
15,928
|
19,912
|
25288b
|
|
Annotation completenessc (%)
|
95.10
|
93.00
|
97.60
|
98.60
|
94b
|
|
Secreted proteins
|
1517
|
1624
|
2059
|
2056
|
2092b
|
|
tRNA genes
|
648
|
626
|
636
|
668
|
862
|
|
Transposable elements (Mb)
|
30.46
|
26.41
|
31.08
|
24.87
|
37.68
|
|
Transposable elements (%)
|
36.03
|
34.2
|
37.28
|
31.35
|
32.62
|
- aStatistics were calculated using the latest references and annotations except noted elsewhere
- bData was directly retrieved from Zheng et al. (2013) as the annotation of Pst-CY32 was not publicly available at the time of writing this paper
- cProgram BUSCO [95] was used to evaluate the annotation completeness of assembled genomes
