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Table 1 Genome statistics of Puccinia striiformis isolates Pst (93–210) and Psh (93TX-2) in comparison with previously sequenced isolatesa

From: Genomic insights into host adaptation between the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)

  Pst (93–210) Psh (93TX-2) Pst 104E 137A- Pst 2 K-41-Yr9 Pst-CY32
Assembly statistics
 Genome size in contigs (bp) 84,627,802 77,368,122 83,355,616 79,310,008 115,495,157
 GC-content (%) 44.39 44.40 44.40 44.43 44.76
 Number of contigs 493 562 156 17,295 10,913
 Number of contigs > 100 kb 243 263 93 3 25
 Contig N50 83 110 23 1320 1434
 Contig N50 length (bp) 295,440 218,468 1,304,018 17,361 21,648
 Mean contig size (bp) 171,659 137,666 534,331 4586 10,583
Annotation statistics
 Protein-coding genes 16,513 15,976 15,928 19,912 25288b
 Annotation completenessc (%) 95.10 93.00 97.60 98.60 94b
 Secreted proteins 1517 1624 2059 2056 2092b
 tRNA genes 648 626 636 668 862
 Transposable elements (Mb) 30.46 26.41 31.08 24.87 37.68
 Transposable elements (%) 36.03 34.2 37.28 31.35 32.62
  1. aStatistics were calculated using the latest references and annotations except noted elsewhere
  2. bData was directly retrieved from Zheng et al. (2013) as the annotation of Pst-CY32 was not publicly available at the time of writing this paper
  3. cProgram BUSCO [95] was used to evaluate the annotation completeness of assembled genomes