Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline

Table 1 Filtering steps and SNPs counts retained after each step

	Retained SNPs count
Initial potential SNPs	48,140
Duplicated SNPs filters	39,086
Clustered SNPs filters	32,840
Call rate ≥ 0.7	23,764
Replication average ≥ 0.95	23,549
SNPs coverage ≥80%	20,421
Reads depth ≥ 5	14,695
SNPs MAF ≥ 0.02	12,589
HWE filters	7988
Retained SNPS for genomic analysis	7988

ISSN: 1471-2164