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Table 1 Genomic regions identified by genome-wide association analysis of resistance to clinical mastitis in Nordic Holstein cattle

From: Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle

BTA Base position Effect –log10(p) Region*** Gene Annotation
3 92,927,352 −1.34 8.88 91,961,838~ 93,178,041 ENSBTAG00000010814 (28,361 bp) intergenic
4 10,928,348 −2.39 11.48 10,113,846 ~  11,178,507 TFPI2 (107,131 bp) intergenic
4 58490979* 1.44 9.44 57,757,451 ~  58,741,047 ENSBTAG00000020620 (233,286 bp) intergenic
5 30,211,323 −1.54 11.71 29,850,270 ~  30,461,626 BCDIN3 (599 bp) upstream
5 106371995* − 1.52 9.23 105,444,242 ~  106,622,012 CCND2 (95,176 bp) intergenic
6 88,729,872 2.78 38.97 88,479,895 ~  88,980,376 GC intron
6 23469606* 1.63 12.53 23,219,637 ~  23,719,758 MANBA intron
6 93131207** 2.05 12.63 92,131,530 ~  93,382,644 CCDC158 (72,869 bp) intergenic
7 57,794,761 1.36 9.32 57,545,197 ~  58,044,816 ENSBTAG00000019739 (33,697) intergenic
8 25,684,799 1.83 11.98 25,434,812 ~  25,935,079 ADAMTSL1 intron
9 80,007,099 −1.45 10.02 79,238,565 ~  80,257,157 NMBR (604,558 bp) intergenic
10 51,191,670 −1.63 9.90 50,733,332 ~  51,441,800 MYO1E intron
11 88,742,878 1.47 9.43 88,150,188 ~  88,993,125 ID2 intergenic
13 62,017,506 −1.95 19.82 61,295,534 ~  62,267,717 PDRG1 (2545 bp) upstream
14 61,344,981 1.76 8.88 61,020,081 ~  61,594,984 ZFPM2 intron
16 47,836,093 −1.88 12.77 47,048,599 ~  48,086,099 ACOT7 intron
18 43,909,571 2.38 17.52 43,659,734 ~  44,159,716 ENSBTAG00000004994 (17,651 bp) intergenic
19 43,038,655 −1.73 14.95 42,148,461 ~  43,288,858 STAT5A intron
20 38,471,456 −2.88 20.57 38,221,493 ~  38,721,830 SPEF2 intron
23 11,477,905 1.53 13.58 11,204,757 ~  11,727,945 MDGA1 (52,973 bp) intergenic
25 35,354,412 1.46 9.47 35,104,498 ~  35,604,430 CUX1 intron
26 20,463,679 1.41 9.44 20,214,011 ~  20,713,741 SLC25A28 (2425 bp) downstream
  1. *The lead SNP was found in the second round
  2. **The lead SNP was found in the third round
  3. ***The method to define the QTL interval can be found in Method