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Table 4 G protein-coupled receptors upregulated in the Y organ

From: Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas

Annotation

Carma_YO_vs_Epi

Carma_YO

Cluster

LogFC

P

FDR

Cluster

LogFC

F

P

FDR

A-B

D1

D3

D4

Gonadotropin-releasing hormone receptor

Cluster-3919.3796

11.07

2.14E-78

1.08E-74

Cluster-136,339.18555

−0.41

−0.43

0.59

−0.39

1.42

0.259

0.437

Tachykinin-like peptides receptor 86C

Cluster-10,974.0

8.32

1.49E-15

4.06E-14

Cluster-136,339.45038

−1.12

0.26

0.24

−0.94

0.38

0.824

0.913

Relaxin receptor 1

Cluster-3919.12767

6.20

5.35E-41

1.27E-38

Cluster-131,500.3

−0.19

0.25

−0.29

− 0.35

1.49

0.805

0.902

Rhodopsin, G0-coupled

Cluster-3919.2920

4.30

8.58E-17

2.71E-15

Cluster-62,481.4

0.27

0.37

−1.21

−2.04

8.31

< 0.001

0.004

Rhodopsin, G0-coupled

Cluster-3919.5747

2.60

2.83E-10

3.40E-09

.

.

.

.

.

.

.

.

Probable G protein-coupled receptor Mth-like 1

Cluster-69,371.0

2.31

4.77E-07

3.13E-06

Cluster-136,339.38316

1.31

−2.34

0.99

2.02

5.94

0.002

0.015

Dopamine D2-like receptor

Cluster-3919.17236

2.18

0.002

6.76E-03

Cluster-96,405.0

0.37

−1.88

−0.75

−0.46

3.35

0.026

0.088

Probable G protein-coupled receptor Mth-like 1

Cluster-79,456.0

1.77

< 0.001

1.58E-03

Cluster-136,339.32542

3.81

−0.95

1.61

3.14

3.73

0.017

0.066

Opsin, ultraviolet-sensitive

Cluster-51,158.0

1.52

< 0.001

1.53E-03

Cluster-38,493.0

0.16

1.04

0.56

0.38

2.07

0.399

0.585

5-hydroxytryptamine receptor 4

Cluster-27,180.0

1.26

0.014

3.23E-02

Cluster-133,987.0

−0.59

−2.27

−2.08

−1.96

3.49

0.022

0.080

G protein-coupled receptor 161

Cluster-69,085.1

0.78

0.011

2.76E-02

Cluster-31,544.1

−0.40

0.89

1.54

1.16

2.59

0.062

0.164

  1. Differential gene expression analysis statistics for clusters annotated with ‘GO:0004930 G protein-coupled activity’ and upregulated in YO relative to epidermis of C. maenas during inter-moult (C3–4), and across the moult cycle within the YO (Carma_YO-transcriptome) for those same GPCRs. Highlighted in bold are clusters differentially expressed over the moult cycle within the Y organ. ‘Rhodopsin, G0-coupled’ was clustered into two clusters within the Carma_YO_vs_Epi-transcriptome, but within a single cluster in the Carma_YO-transcriptome. For Carma_YO, logFC are relative to C3–4. The P-value should be read in conjunction with the false discovery rate (FDR)
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BMC Genomics

ISSN: 1471-2164

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