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Table 3 Descriptive statistic of non-coding detected features (CPM > =1)

From: A comparative analysis of library prep approaches for sequencing low input translatome samples

Kit Sample type Total features of ribosomal RNA Average CPM of ribosomal RNA Total features of ribosomal RNA, lincRNA, microRNA Average CPM of ribosomal RNA, lincRNA, microRNA
Replicate Replicate Replicate Replicate
1 2 3 1 2 3 1 2 3 1 2 3
NEB Input 3 3 3 73.87 67.33 72.15 233 186 140 46.01 29.22 28.34
IP 3 3 4 14.24 6.15 7.80 128 157 268 78.05 28.33 34.25
NuG Input 8 11 10 5533.70 5571.81 5603.65 552 488 415 272.73 274.17 276.54
IP 13 11 17 1803.34 820.73 863.91 583 593 637 97.91 48.26 51.37
SMTer Input 8 5 6 4282.62 7858.83 4641.15 440 359 377 247.75 429.65 261.04
IP 12 6 17 4880.27 7906.14 3936.78 467 411 599 282.51 429.64 240.08
Tru4 Input 17 17 13 232.50 120.94 169.47 804 786 767 13.96 7.59 10.29
IP 8 7 19 415.93 129.19 168.59 546 650 927 26.49 8.94 11.45
Tru70 Input 6 4 4 102.39 28.55 58.50 410 363 406 6.34 2.08 3.81
IP 3 3 4 141.53 54.91 65.21 265 295 341 9.24 3.97 5.10
SMTseq4 Input 13 13 21 214.51 159.76 185.17 750 764 803 11.78 8.93 10.54
IP 7 11 10 851.62 63.75 92.92 844 881 889 46.39 5.91 8.73
SMTseq0.25 Input 6 7 3 224.50 191.46 235.20 531 515 461 12.32 10.52 13.04
IP 6 6 7 886.27 73.72 99.28 476 502 457 48.03 6.43 8.88