Comparative genome analyses reveal sequence features reflecting distinct modes of host-adaptation between dicot and monocot powdery mildew

Table 2 Genome sequence analysis and gene prediction of four dicot powdery mildew biotypes

PM Biotype	GcC1	GcM1	GcM2	GcM3
Raw Reads	84,214,356	89,713,850	86,621,454	82,892,794
Trimmed Reads	81,469,810	85,393,708	84,044,588	78,373,242
Scaffolds	22,821	25,102	14,365	22,581
N50 scaffold length	4625	4846	6751	4696
% Scaffolds	33.3	35	35.6	32
% Genome	39.8	44	30.1	38
Conitgs	30,165	33,822	18,861	29,563
N50 contig length	4095	4312	5946	4253
CEGMA^a	99% / 99%	99% / 99%	99% / 99%	99% / 99%
Assembly Size (Mb)	64.64	71.27	45.08	65.02
Genome size^b (Mb)	173.8	221.8	120	195.8
Sequencing depth	50×	46×	73×	44×
Gene number	6718	6620	6961	6865
SP^c gene number	472	478	499	489
CSEP^d gene number	159	163	175	174

^aCEGMA: Core Eukaryotic Genes Mapping Approach. Two hundred forty-eight core eukaryotic genes are used to evaluate the completeness of each scaffold
^bGenome size is estimated by K-mer frequency
^cSP: Secreted proteins without transmembrane domain
^dCSEP: Candidate secreted effector proteins without homologs outside powdery mildew fungi

ISSN: 1471-2164