Table 1 Percent of clinical and food isolates containing significant genes in lineages I and II, and percent of outbreak isolates in lineages I and II containing significant genes
From: Genes significantly associated with lineage II food isolates of Listeria monocytogenes
Percent of isolates containing gene | ||||||||
|---|---|---|---|---|---|---|---|---|
Gene Name (PROKKA) | lin I clinical (n = 41) | lin I food (n = 34) | lin II clinical (n = 35) | lin II food (n = 60) | lin I clincal+ food (n = 75) | lin II clinical+food (n = 95) | lin I outbreak isolates (n = 27) | lin II outbreak isolates (n = 22) |
cadC | 30.95% | 45.45% | 20.00% | 73.33%* | 37.33% | 53.68% | 48.15% | 13.64% |
cadA | 30.95% | 45.45% | 20.00% | 73.33%* | 37.33% | 53.68% | 48.15% | 13.64% |
hypothetical protein 1 | 21.43% | 33.33% | 14.29% | 66.67%* | 26.67% | 47.37% | 18.52% | 0.00% |
hypothetical protein 2 | 23.81% | 33.33% | 14.29% | 66.67%* | 28.00% | 47.37% | 18.52% | 22.73% |
hypothetical protein 3 | 21.43% | 30.30% | 8.57% | 63.33%* | 25.33% | 43.16% | 22.22% | 13.64% |
ebrB | 2.38% | 21.21% | 8.57% | 53.33%* | 10.67% | 36.84% | 44.44% | 4.55% |
qac | 2.38% | 21.21% | 5.71% | 50.00%* | 10.67% | 33.68% | 44.44% | 4.55% |
regulatory gene | 2.38% | 21.21% | 8.57% | 51.67%* | 10.67% | 35.79% | 44.44% | 4.55% |