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Table 1 Previous studies and tools used to analyze the genes involved during tissue regeneration in salamanders

From: Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research

Reference

Goal

Species

Tissue

Year

Technique

Smith J et al. [57]

EST resource for Ambytomatidae salamanders

A. mexicanum

A. tigrinum

Multiple tissues

2004

Sanger sequencing

Monaghan JR et al. [58]

Gene expression during spinal cord regeneration

A. mexicanum

Spinal cord

2007

Microarray

Makarev E et al. [59]

Gene expression during lenses regeneration

N. viridescens

Eye

2007

Microarray

Monaghan JR et al. [45]

Transcription during nerve-dependent limb regeneration

A. mexicanum

Limb

2009

Microarrays and 454 platforms

Maki N et al. [60]

Gene expression during lenses regeneration

N.viridescens, Cynops pyrrhogaster

Eye

2010

Sanger sequencing

Campbell LJ et al. [61]

Gene expression profile of the regeneration epithelium

A. mexicanum

Epithelium

2011

Microarray

Holman EC et al. [62]

microRNA expression during limb regeneration

A. mexicanum

Limb

2012

Microarray

Monaghan JR et al. [42]

Gene expression during limb regeneration

A. mexicanum

Limb

2012

Microarray

Mercer S et al. [38]

Multi-tissue regeneration signature

N.viridescens

Multiple tissues

2012

Microarray

Sousounis K et al. [63]

Gene expression during lenses regeneration

N. viridescens

Eye

2013

Microarray

Looso M et al. [64]

Tissue regeneration

N. viridescens

Multiple tissues

2013

Sanger sequencing, Illumina and 454 platforms

Abdullayev I et al. [65]

Reference transcriptome and proteome during regeneration

N. viridescens

Multiple tissues

2013

Illumina

Stewart R et al. [36]

Early gene expression in the blastema

A. mexicanum

Limb

2013

Illumina

Wu Ch et al. [46]

Differentially expressed genes during limb regeneration

A. mexicanum

Limb

2013

Illumina

Nakamura K et al. [66]

Early Processes of Retinal regeneration

C. pyrrhogaster Eyes

2014

Illumina

Voss SR et al. [26]

Global analysis of gene expression

Of limb regeneration during 28 days

A. mexicanum

Limb

2015

Microarrays

Bryant DM et al. [7]

Axolotl de Novo Transcriptome from multiple tissue to indentify regeneration factors

A. mexicanum

Multiple tissues

2017

Illumina

Elewa A et al. [67]

The genome and reference transcriptome of Pleurodeles waltl

Pleurodeles waltl genome

body parts and regenerative tissues

2017

Illumina

Nowoshilow S et al. [68]

The axolotl genome and Transcriptome from multiple tissue

A. mexicanum

Multiple tissues

2018

Different plataforms (PacBio, Illumina)

  1. In the last decade, the use of next generation sequencing platforms have been used to discover novel gene during tissue regeneration