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Table 1 Previous studies and tools used to analyze the genes involved during tissue regeneration in salamanders

From: Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research

Reference Goal Species Tissue Year Technique
Smith J et al. [57] EST resource for Ambytomatidae salamanders A. mexicanum
A. tigrinum
Multiple tissues 2004 Sanger sequencing
Monaghan JR et al. [58] Gene expression during spinal cord regeneration A. mexicanum Spinal cord 2007 Microarray
Makarev E et al. [59] Gene expression during lenses regeneration N. viridescens Eye 2007 Microarray
Monaghan JR et al. [45] Transcription during nerve-dependent limb regeneration A. mexicanum Limb 2009 Microarrays and 454 platforms
Maki N et al. [60] Gene expression during lenses regeneration N.viridescens, Cynops pyrrhogaster Eye 2010 Sanger sequencing
Campbell LJ et al. [61] Gene expression profile of the regeneration epithelium A. mexicanum Epithelium 2011 Microarray
Holman EC et al. [62] microRNA expression during limb regeneration A. mexicanum Limb 2012 Microarray
Monaghan JR et al. [42] Gene expression during limb regeneration A. mexicanum Limb 2012 Microarray
Mercer S et al. [38] Multi-tissue regeneration signature N.viridescens Multiple tissues 2012 Microarray
Sousounis K et al. [63] Gene expression during lenses regeneration N. viridescens Eye 2013 Microarray
Looso M et al. [64] Tissue regeneration N. viridescens Multiple tissues 2013 Sanger sequencing, Illumina and 454 platforms
Abdullayev I et al. [65] Reference transcriptome and proteome during regeneration N. viridescens Multiple tissues 2013 Illumina
Stewart R et al. [36] Early gene expression in the blastema A. mexicanum Limb 2013 Illumina
Wu Ch et al. [46] Differentially expressed genes during limb regeneration A. mexicanum Limb 2013 Illumina
Nakamura K et al. [66] Early Processes of Retinal regeneration C. pyrrhogaster Eyes 2014 Illumina
Voss SR et al. [26] Global analysis of gene expression
Of limb regeneration during 28 days
A. mexicanum Limb 2015 Microarrays
Bryant DM et al. [7] Axolotl de Novo Transcriptome from multiple tissue to indentify regeneration factors A. mexicanum Multiple tissues 2017 Illumina
Elewa A et al. [67] The genome and reference transcriptome of Pleurodeles waltl Pleurodeles waltl genome body parts and regenerative tissues 2017 Illumina
Nowoshilow S et al. [68] The axolotl genome and Transcriptome from multiple tissue A. mexicanum Multiple tissues 2018 Different plataforms (PacBio, Illumina)
  1. In the last decade, the use of next generation sequencing platforms have been used to discover novel gene during tissue regeneration