RNA-seq analysis of gene expression changes during pupariation in Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)

Chen, Er-Hu; Hou, Qiu-Li; Dou, Wei; Wei, Dan-Dan; Yue, Yong; Yang, Rui-Lin; Yu, Shuai-Feng; De Schutter, Kristof; Smagghe, Guy; Wang, Jin-Jun

doi:10.1186/s12864-018-5077-z

Table 1 Expression level of the P450 genes during the pupariation in Bactrocera dorsalis

From: RNA-seq analysis of gene expression changes during pupariation in Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)

Gene ID	WS-FPKM	LWS-FPKM	WPS-FPKM	WS vs LWS	WS vs WPS	Blast nr
Down-regulated genes
LOC105230198	6.14	0.11	0.25	−6.10	−4.67	cytochrome P450 6a13
LOC105233810	1577.65	48.39	76.59	−5.02	−4.37	cytochrome P450 6 g2
LOC109579301	92.94	4.84	3.95	−4.54	−4.27	cytochrome P450 6 g1-like
LOC105222599	405.68	20.38	16.49	−4.39	−4.68	cytochrome P450 6 g1-like
LOC105228198	3.01	0.20	0.11	−4.14	−4.81	cytochrome P450 6a9-like
LOC105233910	59.36	3.82	18.24	−3.95	− 1.70	cytochrome P450 4c3
LOC105230949	152.70	10.16	7.75	−3.91	−4.28	cytochrome P450 6a14
LOC105225363	190.01	13.39	15.48	−3.85	−3.64	cytochrome P450 9b2-like
LOC105230203	61.83	5.34	3.85	−3.53	−4.00	cytochrome P450 6a9-like
LOC105230201	22.22	2.09	0.98	−3.46	−4.58	cytochrome P450 6a21
LOC105231082	81.51	8.77	5.23	−3.24	−4.01	cytochrome P450 12e1, mitochondrial
LOC105232227	8.40	0.92	1.61	−3.23	−2.36	cytochrome P450 311a1
LOC105231049	1370.38	159.16	56.06	−3.17	−4.67	cytochrome P450 304a1
LOC105228053	16.88	1.96	2.48	−3.15	−2.78	cytochrome P450 4ad1
LOC105231113	205.39	23.07	9.89	−3.08	−4.06	cytochrome P450 12e1
LOC105224924	39.70	5.56	11.36	−2.87	−1.82	cytochrome P450 18a1
LOC105231454	27.69	5.56	10.06	−2.36	− 1.44	cytochrome P450 4d8
LOC105230935	48.89	10.80	13.69	−2.19	−1.85	cytochrome P450 6d5
LOC105230199	12.80	2.85	3.38	−2.16	−1.91	cytochrome P450 317a1
LOC105230713	7.86	1.78	1.91	−2.15	−2.03	cytochrome P450 301a1, mitochondrial
LOC105226210	53.21	13.39	10.29	−2.02	−2.39	cytochrome P450 12c1, mitochondrial
LOC109580018	17.03	4.82	2.61	−2.01	−3.05	cytochrome P450 313a4
LOC105234039	254.72	70.14	60.75	−1.88	−2.16	cytochrome P450 309a1
LOC105227474	221.04	60.58	48.65	−1.84	−2.15	cytochrome P450 6a2-like
LOC105228051	79.19	23.67	23.14	−1.76	−1.80	cytochrome P450 4e2-like
LOC105225824	50.18	10.47	12.11	−1.73	−1.66	cytochrome P450 9f2
LOC105226035	170.22	52.36	53.18	−1.71	−1.70	cytochrome P450 6d4
LOC105225364	262.08	82.38	56.90	−1.68	−2.24	cytochrome P450 9b2-like
LOC105225361	30.28	9.72	15.56	−1.68	−1.01	cytochrome P450 9 h1
LOC105230202	30.33	9.71	10.32	−1.66	−1.54	cytochrome P450 6a21
LOC105229174	37.97	12.68	8.74	−1.64	−2.18	cytochrome P450 4p1-like
LOC105227668	27.04	8.80	6.78	−1.62	−2.00	cytochrome P450 4aa1
LOC105224875	10.38	4.78	4.89	−1.11	−1.05	cytochrome P450 302a1, mitochondrial
Up-regulated genes
LOC105226220	1.37	13.26	61.18	3.28	5.50	cytochrome P450 12b2, mitochondrial
LOC105227996	5.00	29.60	30.28	2.81	2.77	cytochrome P450 313a4
LOC105227639	77.80	233.28	440.26	1.57	2.50	cytochrome P450 12a4, mitochondrial
LOC105226219	45.76	134.86	207.65	1.56	2.18	cytochrome P450 12b1, mitochondrial-like
LOC105230977	6.85	13.84	13.31	1.22	1.14	cytochrome P450 313a4
LOC105231048	541.23	1207.42	1104.91	1.14	1.03	cytochrome P450 304a1

The criteria applied for significance difference are FDR ≤ 0.01, and estimated absolute |log2Ratio| ≥ 1

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