TY - JOUR AU - Zhou, W. W. AU - Liang, Q. M. AU - Xu, Y. AU - Gurr, G. M. AU - Bao, Y. Y. AU - Zhou, X. P. AU - Zhang, C. X. AU - Cheng, J. AU - Zhu, Z. R. PY - 2013 DA - 2013// TI - Genomic Insights into the Glutathione S-Transferase Gene Family of Two Rice Planthoppers, Nilaparvata lugens (Stal) and Sogatella furcifera (Horvath) (Hemiptera: Delphacidae) JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0056604 DO - 10.1371/journal.pone.0056604 ID - Zhou2013 ER - TY - JOUR AU - Ramesh, K. AU - Padmavathi, G. AU - Deen, R. AU - Pandey, M. K. AU - Lakshmi, V. J. AU - Bentur, J. PY - 2014 DA - 2014// TI - Whitebacked planthopper Sogatella furcifera (Horváth)(Homoptera: Delphacidae) resistance in rice variety Sinna Sivappu JO - Euphytica VL - 200 UR - https://doi.org/10.1007/s10681-014-1175-4 DO - 10.1007/s10681-014-1175-4 ID - Ramesh2014 ER - TY - STD TI - Shepherd R, Forbes SA, Beare D, Bamford S, Cole CG, Ward S, Bindal N, Gunasekaran P, Jia MM, Kok CY, et al. Data mining using the catalogue of somatic mutations in Cancer BioMart. Database-Oxford. 2011. ID - ref3 ER - TY - JOUR AU - Thao, M. L. AU - Moran, N. A. AU - Abbot, P. AU - Brennan, E. B. AU - Burckhardt, D. H. AU - Baumann, P. PY - 2000 DA - 2000// TI - Cospeciation of psyllids and their primary prokaryotic endosymbionts JO - Appl Environ Microb VL - 66 UR - https://doi.org/10.1128/AEM.66.7.2898-2905.2000 DO - 10.1128/AEM.66.7.2898-2905.2000 ID - Thao2000 ER - TY - JOUR AU - Douglas, A. E. PY - 1998 DA - 1998// TI - Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera JO - Annu Rev Entomol VL - 43 UR - https://doi.org/10.1146/annurev.ento.43.1.17 DO - 10.1146/annurev.ento.43.1.17 ID - Douglas1998 ER - TY - JOUR AU - Montllor, C. B. AU - Maxmen, A. AU - Purcell, A. H. PY - 2002 DA - 2002// TI - Facultative bacterial endosymbionts benefit pea aphids Acyrthosiphon pisum under heat stress JO - Ecol Entomol VL - 27 UR - https://doi.org/10.1046/j.1365-2311.2002.00393.x DO - 10.1046/j.1365-2311.2002.00393.x ID - Montllor2002 ER - TY - JOUR AU - Zytynska, S. E. AU - Weisser, W. W. PY - 2016 DA - 2016// TI - The natural occurrence of secondary bacterial symbionts in aphids JO - Ecol Entomol VL - 41 UR - https://doi.org/10.1111/een.12281 DO - 10.1111/een.12281 ID - Zytynska2016 ER - TY - JOUR AU - Kurtti, T. J. AU - Munderloh, U. G. AU - Andreadis, T. G. AU - Magnarelli, L. A. AU - Mather, T. N. PY - 1996 DA - 1996// TI - Tick cell culture isolation of an intracellular prokaryote from the tick Ixodes scapularis JO - J Invertebr Pathol VL - 67 UR - https://doi.org/10.1006/jipa.1996.0050 DO - 10.1006/jipa.1996.0050 ID - Kurtti1996 ER - TY - JOUR AU - Santos-Garcia, D. AU - Rollat-Farnier, P. A. AU - Beitia, F. AU - Zchori-Fein, E. AU - Vavre, F. AU - Mouton, L. AU - Moya, A. AU - Latorre, A. AU - Silva, F. J. PY - 2014 DA - 2014// TI - The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci JO - Genome Biol Evol VL - 6 UR - https://doi.org/10.1093/gbe/evu077 DO - 10.1093/gbe/evu077 ID - Santos-Garcia2014 ER - TY - JOUR AU - Perlman, S. J. AU - Magnus, S. A. AU - Copley, C. R. PY - 2010 DA - 2010// TI - Pervasive associations between Cybaeus spiders and the bacterial symbiont Cardinium JO - J Invertebr Pathol VL - 103 UR - https://doi.org/10.1016/j.jip.2009.12.009 DO - 10.1016/j.jip.2009.12.009 ID - Perlman2010 ER - TY - JOUR AU - Lewis, S. E. AU - Rice, A. AU - Hurst, G. D. D. AU - Baylis, M. PY - 2014 DA - 2014// TI - First detection of endosymbiotic bacteria in biting midges Culicoides pulicaris and Culicoides punctatus, important Palaearctic vectors of bluetongue virus JO - Med Vet Entomol VL - 28 UR - https://doi.org/10.1111/mve.12055 DO - 10.1111/mve.12055 ID - Lewis2014 ER - TY - JOUR AU - Noel, G. R. AU - Atibalentja, N. PY - 2006 DA - 2006// TI - 'Candidatus Paenicardinium endonii', an endosymbiont of the plant-parasitic nematode Heterodera glycines (Nemata: Tylenchida), affiliated to the phylum Bacteroidetes JO - Int J Syst Evol Microbiol VL - 56 UR - https://doi.org/10.1099/ijs.0.64234-0 DO - 10.1099/ijs.0.64234-0 ID - Noel2006 ER - TY - JOUR AU - Chiel, E. AU - Gottlieb, Y. AU - Zchori-Fein, E. AU - Mozes-Daube, N. AU - Katzir, N. AU - Inbar, M. AU - Ghanim, M. PY - 2007 DA - 2007// TI - Biotype-dependent secondary symbiont communities in sympatric populations of Bemisia tabaci JO - B Entomol Res VL - 97 UR - https://doi.org/10.1017/S0007485307005159 DO - 10.1017/S0007485307005159 ID - Chiel2007 ER - TY - JOUR AU - Ahmed, M. Z. AU - De Barro, P. J. AU - Ren, S. X. AU - Greeff, J. M. AU - Qiu, B. L. PY - 2013 DA - 2013// TI - Evidence for Horizontal Transmission of Secondary Endosymbionts in the Bemisia tabaci Cryptic Species Complex JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0053084 DO - 10.1371/journal.pone.0053084 ID - Ahmed2013 ER - TY - JOUR AU - Zchori-Fein, E. AU - Perlman, S. J. PY - 2004 DA - 2004// TI - Distribution of the bacterial symbiont Cardinium in arthropods JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02203.x DO - 10.1111/j.1365-294X.2004.02203.x ID - Zchori-Fein2004 ER - TY - JOUR AU - Hedges, L. M. AU - Brownlie, J. C. AU - O'Neill, S. L. AU - Johnson, K. N. PY - 2008 DA - 2008// TI - Wolbachia and virus protection in insects JO - Science VL - 322 UR - https://doi.org/10.1126/science.1162418 DO - 10.1126/science.1162418 ID - Hedges2008 ER - TY - JOUR AU - Douglas, A. E. AU - Prosser, W. A. PY - 1992 DA - 1992// TI - Synthesis of the essential amino-acid tryptophan in the pea aphid (Acyrthosiphon-Pisum) Symbiosis JO - J Insect Physiol VL - 38 UR - https://doi.org/10.1016/0022-1910(92)90107-O DO - 10.1016/0022-1910(92)90107-O ID - Douglas1992 ER - TY - JOUR AU - de Mello, R. A. AU - Marques, A. M. AU - Araujo, A. PY - 2013 DA - 2013// TI - HER2 therapies and gastric cancer: a step forward JO - World J Gastroentero VL - 19 UR - https://doi.org/10.3748/wjg.v19.i37.6165 DO - 10.3748/wjg.v19.i37.6165 ID - de Mello2013 ER - TY - JOUR AU - Chigira, A. AU - Miura, K. PY - 2005 DA - 2005// TI - Detection of 'Candidatus Cardinium' bacteria from the haploid host Brevipalpus californicus (Acari : Tenuipalpidae) and effect on the host JO - Exp Appl Acarol VL - 37 UR - https://doi.org/10.1007/s10493-005-0592-4 DO - 10.1007/s10493-005-0592-4 ID - Chigira2005 ER - TY - JOUR AU - Morag, N. AU - Klement, E. AU - Saroya, Y. AU - Lensky, I. AU - Gottlieb, Y. PY - 2012 DA - 2012// TI - Prevalence of the symbiont Cardinium in Culicoides (Diptera: Ceratopogonidae) vector species is associated with land surface temperature JO - FASEB J VL - 26 UR - https://doi.org/10.1096/fj.12-210419 DO - 10.1096/fj.12-210419 ID - Morag2012 ER - TY - JOUR AU - Duron, O. AU - Hurst, G. D. D. AU - Hornett, E. A. AU - Josling, J. A. AU - Engelstadter, J. PY - 2008 DA - 2008// TI - High incidence of the maternally inherited bacterium Cardinium in spiders JO - Mol Ecol VL - 17 UR - https://doi.org/10.1111/j.1365-294X.2008.03689.x DO - 10.1111/j.1365-294X.2008.03689.x ID - Duron2008 ER - TY - JOUR AU - Mee, P. T. AU - Weeks, A. R. AU - Walker, P. J. AU - Hoffmann, A. A. AU - Duchemin, J. B. PY - 2015 DA - 2015// TI - Detection of low-level Cardinium and Wolbachia infections in Culicoides JO - Appl Environ Microb VL - 81 UR - https://doi.org/10.1128/AEM.01239-15 DO - 10.1128/AEM.01239-15 ID - Mee2015 ER - TY - JOUR AU - Nakamura, Y. AU - Gotoh, T. AU - Imanishi, S. AU - Mita, K. AU - Kurtti, T. J. AU - Noda, H. PY - 2011 DA - 2011// TI - Differentially expressed genes in silkworm cell cultures in response to infection by Wolbachia and Cardinium endosymbionts JO - Insect Mol Biol VL - 20 UR - https://doi.org/10.1111/j.1365-2583.2010.01056.x DO - 10.1111/j.1365-2583.2010.01056.x ID - Nakamura2011 ER - TY - JOUR AU - Zhang, K. J. AU - Han, X. AU - Hong, X. Y. PY - 2013 DA - 2013// TI - Various infection status and molecular evidence for horizontal transmission and recombination of Wolbachia and Cardinium among rice planthoppers and related species JO - Insect Sci VL - 20 UR - https://doi.org/10.1111/j.1744-7917.2012.01537.x DO - 10.1111/j.1744-7917.2012.01537.x ID - Zhang2013 ER - TY - JOUR AU - Forbes, S. AU - Tang, G. AU - Teague, J. AU - Menzies, A. AU - Futreal, A. AU - Stratton, M. PY - 2009 DA - 2009// TI - Annotating complete cancer genomes in the catalogue of somatic mutations in cancer (COSMIC) JO - Cancer Res VL - 69 ID - Forbes2009 ER - TY - JOUR AU - Bolger, A. M. AU - Lohse, M. AU - Usadel, B. PY - 2014 DA - 2014// TI - Trimmomatic: a flexible trimmer for Illumina sequence data JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu170 DO - 10.1093/bioinformatics/btu170 ID - Bolger2014 ER - TY - JOUR AU - Langmead, B. AU - Salzberg, S. L. PY - 2012 DA - 2012// TI - Fast gapped-read alignment with bowtie 2 JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.1923 DO - 10.1038/nmeth.1923 ID - Langmead2012 ER - TY - JOUR AU - Xu, H. B. AU - Luo, X. AU - Qian, J. AU - Pang, X. H. AU - Song, J. Y. AU - Qian, G. R. AU - Chen, J. H. AU - Chen, S. L. PY - 2012 DA - 2012// TI - FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0052249 DO - 10.1371/journal.pone.0052249 ID - Xu2012 ER - TY - STD TI - Luo RB, Liu BH, Xie YL, Li ZY, Huang WH, Yuan JY, He GZ, Chen YX, Pan Q, Liu YJ, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience. 2012;1. ID - ref29 ER - TY - JOUR AU - Boetzer, M. AU - Henkel, C. V. AU - Jansen, H. J. AU - Butler, D. AU - Pirovano, W. PY - 2011 DA - 2011// TI - Scaffolding pre-assembled contigs using SSPACE JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btq683 DO - 10.1093/bioinformatics/btq683 ID - Boetzer2011 ER - TY - JOUR AU - Boetzer, M. AU - Pirovano, W. PY - 2012 DA - 2012// TI - Toward almost closed genomes with GapFiller JO - Genome Biol VL - 13 UR - https://doi.org/10.1186/gb-2012-13-6-r56 DO - 10.1186/gb-2012-13-6-r56 ID - Boetzer2012 ER - TY - JOUR AU - Delcher, A. L. AU - Bratke, K. A. AU - Powers, E. C. AU - Salzberg, S. L. PY - 2007 DA - 2007// TI - Identifying bacterial genes and endosymbiont DNA with glimmer JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm009 DO - 10.1093/bioinformatics/btm009 ID - Delcher2007 ER - TY - JOUR AU - Hyatt, D. AU - Chen, G. L. AU - Locascio, P. F. AU - Land, M. L. AU - Larimer, F. W. AU - Hauser, L. J. PY - 2010 DA - 2010// TI - Prodigal: prokaryotic gene recognition and translation initiation site identification JO - BMC Bioinformatics VL - 11 UR - https://doi.org/10.1186/1471-2105-11-119 DO - 10.1186/1471-2105-11-119 ID - Hyatt2010 ER - TY - BOOK PY - 2011 DA - 2011// TI - WUGC, JCVI and Baylor ID - ref34 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Lagesen, K. AU - Hallin, P. AU - Rodland, E. A. AU - Staerfeldt, H. H. AU - Rognes, T. AU - Ussery, D. W. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - JOUR AU - Laslett, D. AU - Canback, B. PY - 2004 DA - 2004// TI - ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh152 DO - 10.1093/nar/gkh152 ID - Laslett2004 ER - TY - JOUR AU - Finn, R. D. AU - Coggill, P. AU - Eberhardt, R. Y. AU - Eddy, S. R. AU - Mistry, J. AU - Mitchell, A. L. AU - Potter, S. C. AU - Punta, M. AU - Qureshi, M. AU - Sangrador-Vegas, A. PY - 2016 DA - 2016// TI - The Pfam protein families database: towards a more sustainable future JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1344 DO - 10.1093/nar/gkv1344 ID - Finn2016 ER - TY - JOUR AU - Selengut, J. D. AU - Haft, D. H. AU - Davidsen, T. AU - Ganapathy, A. AU - Gwinn-Giglio, M. AU - Nelson, W. C. AU - Richter, A. R. AU - White, O. PY - 2007 DA - 2007// TI - TIGRFAMs and genome properties: tools for the assignment of molecular function and biological process in prokaryotic genomes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl1043 DO - 10.1093/nar/gkl1043 ID - Selengut2007 ER - TY - JOUR AU - Johnson, L. S. t. e. v. e. n. AU - Eddy, S. e. a. n. R. AU - Portugaly, E. l. o. n. PY - 2010 DA - 2010// TI - Hidden Markov model speed heuristic and iterative HMM search procedure JO - BMC Bioinformatics VL - 11 UR - https://doi.org/10.1186/1471-2105-11-431 DO - 10.1186/1471-2105-11-431 ID - Johnson2010 ER - TY - STD TI - Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Palaniappan K, Szeto E, Pillay M, Chen IMA, Pati A, et al. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4). Stand Genomic Sci. 2015;10:86. ID - ref41 ER - TY - JOUR AU - Krogh, A. AU - Larsson, B. AU - von Heijne, G. AU - Sonnhammer, E. L. L. PY - 2001 DA - 2001// TI - Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes JO - J Mol Biol VL - 305 UR - https://doi.org/10.1006/jmbi.2000.4315 DO - 10.1006/jmbi.2000.4315 ID - Krogh2001 ER - TY - JOUR AU - Petersen, T. N. AU - Brunak, S. AU - von Heijne, G. AU - Nielsen, H. PY - 2011 DA - 2011// TI - SignalP 4.0: discriminating signal peptides from transmembrane regions JO - Nat Methods VL - 8 UR - https://doi.org/10.1038/nmeth.1701 DO - 10.1038/nmeth.1701 ID - Petersen2011 ER - TY - JOUR AU - Ferro, A. AU - Peleteiro, B. AU - Malvezzi, M. AU - Bosetti, C. AU - Bertuccio, P. AU - Levi, F. AU - Negri, E. AU - La Vecchia, C. AU - Lunet, N. PY - 2014 DA - 2014// TI - Worldwide trends in gastric cancer mortality (1980-2011), with predictions to 2015, and incidence by subtype JO - Eur J Cancer VL - 50 UR - https://doi.org/10.1016/j.ejca.2014.01.029 DO - 10.1016/j.ejca.2014.01.029 ID - Ferro2014 ER - TY - JOUR AU - Varani, A. M. AU - Siguier, P. AU - Gourbeyre, E. AU - Charneau, V. AU - Chandler, M. PY - 2011 DA - 2011// TI - ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes JO - Genome Biol VL - 12 UR - https://doi.org/10.1186/gb-2011-12-3-r30 DO - 10.1186/gb-2011-12-3-r30 ID - Varani2011 ER - TY - JOUR AU - Saier, M. H. AU - Reddy, V. S. AU - Tamang, D. G. AU - Vastermark, A. PY - 2014 DA - 2014// TI - The transporter classification database JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1097 DO - 10.1093/nar/gkt1097 ID - Saier2014 ER - TY - JOUR AU - Yoon, S. H. AU - Ha, S. M. AU - Kwon, S. AU - Lim, J. AU - Kim, Y. AU - Seo, H. AU - Chun, J. PY - 2016 DA - 2016// TI - Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies JO - Int J Syst Evol Microbiol VL - 67 ID - Yoon2016 ER - TY - JOUR AU - Uchiyama, I. AU - Mihara, M. AU - Nishide, H. AU - Chiba, H. PY - 2013 DA - 2013// TI - MBGD update 2013: the microbial genome database for exploring the diversity of microbial world JO - Nucleic Acids Res VL - 41 ID - Uchiyama2013 ER - TY - JOUR AU - Katoh, K. AU - Standley, D. M. PY - 2016 DA - 2016// TI - A simple method to control over-alignment in the MAFFT multiple sequence alignment program JO - Bioinformatics VL - 32 UR - https://doi.org/10.1093/bioinformatics/btw108 DO - 10.1093/bioinformatics/btw108 ID - Katoh2016 ER - TY - JOUR AU - Talavera, G. AU - Castresana, J. PY - 2007 DA - 2007// TI - Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments JO - Syst Biol VL - 56 UR - https://doi.org/10.1080/10635150701472164 DO - 10.1080/10635150701472164 ID - Talavera2007 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0 JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - JOUR AU - Eisen, J. A. PY - 2000 DA - 2000// TI - Horizontal gene transfer among microbial genomes: new insights from complete genome analysis JO - Curr Opin Genet Dev VL - 10 UR - https://doi.org/10.1016/S0959-437X(00)00143-X DO - 10.1016/S0959-437X(00)00143-X ID - Eisen2000 ER - TY - JOUR AU - Garcia-Vallve, S. AU - Romeu, A. AU - Palau, J. PY - 2000 DA - 2000// TI - Horizontal gene transfer in bacterial and archaeal complete genomes JO - Genome Res VL - 10 UR - https://doi.org/10.1101/gr.130000 DO - 10.1101/gr.130000 ID - Garcia-Vallve2000 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Shi, J. AU - Yao, D. M. AU - Liu, W. AU - Wang, N. AU - Lv, H. J. AU - Zhang, G. J. AU - Ji, M. J. AU - Xu, L. AU - He, N. Y. AU - Shi, B. Y. PY - 2012 DA - 2012// TI - Highly frequent PIK3CA amplification is associated with poor prognosis in gastric cancer JO - BMC Cancer VL - 12 UR - https://doi.org/10.1186/1471-2407-12-50 DO - 10.1186/1471-2407-12-50 ID - Shi2012 ER - TY - JOUR AU - Merhej, V. AU - Royer-Carenzi, M. AU - Pontarotti, P. AU - Raoult, D. PY - 2009 DA - 2009// TI - Massive comparative genomic analysis reveals convergent evolution of specialized bacteria JO - Biol Direct VL - 4 UR - https://doi.org/10.1186/1745-6150-4-13 DO - 10.1186/1745-6150-4-13 ID - Merhej2009 ER - TY - JOUR AU - Wang, L. AU - Gao, C. AU - Tang, N. AU - Hu, S. AU - Wu, Q. PY - 2015 DA - 2015// TI - Identification of genetic variations associated with epsilon-poly-lysine biosynthesis in Streptomyces albulus ZPM by genome sequencing JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep09201 DO - 10.1038/srep09201 ID - Wang2015 ER - TY - JOUR AU - Wang, Y. P. AU - Tang, H. B. AU - DeBarry, J. D. AU - Tan, X. AU - Li, J. P. AU - Wang, X. Y. AU - Lee, T. H. AU - Jin, H. Z. AU - Marler, B. AU - Guo, H. PY - 2012 DA - 2012// TI - MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1293 DO - 10.1093/nar/gkr1293 ID - Wang2012 ER - TY - JOUR AU - Corso, G. AU - Velho, S. AU - Paredes, J. AU - Pedrazzani, C. AU - Martins, D. AU - Milanezi, F. AU - Pascale, V. AU - Vindigni, C. AU - Pinheiro, H. AU - Leite, M. PY - 2011 DA - 2011// TI - Oncogenic mutations in gastric cancer with microsatellite instability JO - Eur J Cancer VL - 47 UR - https://doi.org/10.1016/j.ejca.2010.09.008 DO - 10.1016/j.ejca.2010.09.008 ID - Corso2011 ER - TY - JOUR AU - Wernegreen, J. J. PY - 2002 DA - 2002// TI - Genome evolution in bacterial endosymbionts of insects JO - Nat Rev Genet VL - 3 UR - https://doi.org/10.1038/nrg931 DO - 10.1038/nrg931 ID - Wernegreen2002 ER - TY - JOUR AU - Du Vigneaud, V. AU - Melville, D. B. PY - 1942 DA - 1942// TI - The structure of biotin: a study of desthiobiotin JO - J Biol Chem VL - 146 ID - Du Vigneaud1942 ER - TY - JOUR AU - Dadd, R. H. PY - 1973 DA - 1973// TI - Insect nutrition - current developments and metabolic implications JO - Annu Rev Entomol VL - 18 UR - https://doi.org/10.1146/annurev.en.18.010173.002121 DO - 10.1146/annurev.en.18.010173.002121 ID - Dadd1973 ER - TY - JOUR AU - Spalding, M. D. AU - Prigge, S. T. PY - 2010 DA - 2010// TI - Lipoic acid metabolism in microbial pathogens JO - Microbiology and molecular biology reviews : MMBR VL - 74 UR - https://doi.org/10.1128/MMBR.00008-10 DO - 10.1128/MMBR.00008-10 ID - Spalding2010 ER - TY - JOUR AU - Berg, O. G. AU - Kurland, C. G. PY - 2002 DA - 2002// TI - Evolution of microbial genomes: sequence acquisition and loss JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004050 DO - 10.1093/oxfordjournals.molbev.a004050 ID - Berg2002 ER - TY - JOUR AU - Koonin, E. V. AU - Makarova, K. S. AU - Aravind, L. PY - 2001 DA - 2001// TI - Horizontal gene transfer in prokaryotes: quantification and classification JO - Annu Rev Microbiol VL - 55 UR - https://doi.org/10.1146/annurev.micro.55.1.709 DO - 10.1146/annurev.micro.55.1.709 ID - Koonin2001 ER - TY - JOUR AU - McBride, M. J. AU - Zhu, Y. T. PY - 2013 DA - 2013// TI - Gliding motility and por secretion system genes are widespread among members of the phylum Bacteroidetes JO - J Bacteriol VL - 195 UR - https://doi.org/10.1128/JB.01962-12 DO - 10.1128/JB.01962-12 ID - McBride2013 ER - TY - JOUR AU - Braun, T. F. AU - McBride, M. J. PY - 2005 DA - 2005// TI - Flavobacterium johnsoniae GldJ is a lipoprotein that is required for gliding motility JO - J Bacteriol VL - 187 UR - https://doi.org/10.1128/JB.187.8.2628-2637.2005 DO - 10.1128/JB.187.8.2628-2637.2005 ID - Braun2005 ER - TY - JOUR AU - Koronakis, V. AU - Li, J. AU - Koronakis, E. AU - Stauffer, K. PY - 1997 DA - 1997// TI - Structure of TolC, the outer membrane component of the bacterial type I efflux system, derived from two-dimensional crystals JO - Mol Microbiol VL - 23 UR - https://doi.org/10.1046/j.1365-2958.1997.d01-1880.x DO - 10.1046/j.1365-2958.1997.d01-1880.x ID - Koronakis1997 ER - TY - JOUR AU - Mauriello, E. M. AU - Mouhamar, F. AU - Nan, B. AU - Ducret, A. AU - Dai, D. AU - Zusman, D. R. AU - Mignot, T. PY - 2010 DA - 2010// TI - Bacterial motility complexes require the actin-like protein, MreB and the Ras homologue, MglA JO - EMBO J VL - 29 UR - https://doi.org/10.1038/emboj.2009.356 DO - 10.1038/emboj.2009.356 ID - Mauriello2010 ER - TY - JOUR AU - McCutcheon, J. P. AU - Moran, N. A. PY - 2012 DA - 2012// TI - Extreme genome reduction in symbiotic bacteria JO - Nat Rev Microbiol VL - 10 UR - https://doi.org/10.1038/nrmicro2670 DO - 10.1038/nrmicro2670 ID - McCutcheon2012 ER - TY - JOUR AU - Gotoda, T. AU - Uedo, N. AU - Yoshinaga, S. AU - Tanuma, T. AU - Morita, Y. AU - Doyama, H. AU - Aso, A. AU - Hirasawa, T. AU - Yano, T. AU - Uchita, K. PY - 2016 DA - 2016// TI - Basic principles and practice of gastric cancer screening using high-definition white-light gastroscopy: eyes can only see what the brain knows JO - Digest Endosc VL - 28 UR - https://doi.org/10.1111/den.12623 DO - 10.1111/den.12623 ID - Gotoda2016 ER - TY - JOUR AU - Ku, C. A. AU - Lo, W. S. AU - Chen, L. L. AU - Kuo, C. H. PY - 2013 DA - 2013// TI - Complete genomes of two dipteran-associated Spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in Spiroplasma JO - Genome Biology and Evolution VL - 5 UR - https://doi.org/10.1093/gbe/evt084 DO - 10.1093/gbe/evt084 ID - Ku2013 ER - TY - JOUR AU - Bolaños, L. M. AU - Servín-Garcidueñas, L. E. AU - Martínez-Romero, E. PY - 2015 DA - 2015// TI - Arthropod–Spiroplasma relationship in the genomic era JO - FEMS Microbiol Ecol VL - 91 UR - https://doi.org/10.1093/femsec/fiu008 DO - 10.1093/femsec/fiu008 ID - Bolaños2015 ER - TY - JOUR AU - Ioannidis, A. AU - Papaioannou, P. AU - Magiorkinis, E. AU - Magana, M. AU - Ioannidou, V. AU - Tzanetou, K. AU - Burriel, A. R. AU - Tsironi, M. AU - Chatzipanagiotou, S. PY - 2017 DA - 2017// TI - Detecting the diversity of mycoplasma and Ureaplasma endosymbionts hosted by trichomonas vaginalis isolates JO - Front Microbiol VL - 8 UR - https://doi.org/10.3389/fmicb.2017.01188 DO - 10.3389/fmicb.2017.01188 ID - Ioannidis2017 ER - TY - JOUR AU - Khachane, A. N. AU - Timmis, K. N. AU - dos Santos, V. A. P. M. PY - 2007 DA - 2007// TI - Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msl174 DO - 10.1093/molbev/msl174 ID - Khachane2007 ER - TY - JOUR AU - Gil, R. AU - Latorre, A. AU - Moya, A. PY - 2004 DA - 2004// TI - Bacterial endosymbionts of insects: insights from comparative genomics JO - Environ Microbiol VL - 6 UR - https://doi.org/10.1111/j.1462-2920.2004.00691.x DO - 10.1111/j.1462-2920.2004.00691.x ID - Gil2004 ER -