Table 3 The number of MHC Class I lineage genes predicted in the Pangasianodon hypophthalmus genome
Predicted MHC Class I lineagea | scaffold number | Gene IDs | CDS length |
|---|---|---|---|
U | sc0000028 | phy_g23340.t1 | 979 |
U | sc0000028 | phy_g23351.t1 | 2826 |
U | sc0000028 | phy_g23352.t1 | 1500 |
U | sc0000028 | phy_g23353.t1 | 2190 |
U | sc0000013 | phy_g27727.t1 | 355 |
U | sc0000013 | phy_g27728.t1 | 556 |
U | sc0000013 | phy_g27729.t1 | 630 |
U | sc0000006 | phy_g7177.t1 | 1017 |
U | sc0000006 | phy_g7178.t1 | 1069 |
U | sc0000006 | phy_g7179.t1 | 534 |
U | sc0000006 | phy_g7188.t1 | 1807 |
Z | sc0000105 | phy_g26176.t1 | 1021 |
Z | sc0000105 | phy_g26177.t1 | 2161 |
Z | sc0000105 | phy_g26178.t1 | 826 |
Z | sc0000105 | phy_g26179.t1 | 1180 |
Z | sc0000307 | phy_g26180.t1 | 1282 |
S | sc0000004 | phy_g12382.t1 | 946 |
S | sc0000004 | phy_g12383.t1 | 562 |
L | sc0000040 | phy_g5627.t1 | 813 |