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Table 4 Candidate genes for sex determination in catfish genomes

From: A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement

 

Striped catfish (Pangasianodon hypophthalmus)

Channel catfish (Ictalurus punctatus)

Zebrafish (Danio rerio)

Gene name

Scaffold number

Gene IDs

Chr

NCBI ID

Chr

Ensemble ID

sox9b

sc0000006

phy_g7559

2

XP_017315164.1

3

ENSDARG00000043923

sox30

sc0000034

phy_g15976

4

XP_017347423.1

6

ENSDARG00000031664

dmrt1

sc0000020

phy_g50867

22

XP_017308041.1

5

ENSDARG00000007349

dmrt2

sc0000020

phy_g50865

22

XP_017308058.1

5

ENSDARG00000015072

dmrt3

sc0000020

phy_g50866

22

XP_017308040.1

5

ENSDARG00000035290

hsd17b3a

sc0000001

phy_g48256a

5

XP_017323206.1

8

ENSDARG00000023287

sf1

sc0000027

phy_g43702

7

XP_017327018.1

7

ENSDARG00000008188

amh

sc0000055

phy_g41360

10

XP_017333187.1

22

ENSDARG00000014357

tdrd1

sc0000005

phy_g9344

13

XP_017338221.1

12

ENSDARG00000007465

tdrd7

sc0000027

phy_g43892

7

XP_017327887.1

1

ENSDARG00000032808

piwil1

sc0000047

phy_g14817

20

XP_017351061.1

8

ENSDARG00000041699

piwil2

sc0000020

phy_g50577

22

XP_017306734.1

5

ENSDARG00000062601

ddx4

sc0000035

phy_g5089

16

XP_017345559.1

10

ENSDARG00000014373

spata22

sc0000010

phy_g34371

28

XP_017316192.1

5

ENSDARG00000098537

spata17

sc0000014

phy_g35239

9

XP_017330886.1

17

ENSDARG00000054414

  1. aBLAST results of the candidate genes for sex determination with at least 50% coverage of the P. hypophthalmus gene, except phy_g48256 (47% coverage)