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Fig. 2 | BMC Genomics

Fig. 2

From: Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

Fig. 2

This stacked-bar graph provides the number of up-regulated (red portion of bar) and down-regulated (green portion of bar) AR-DEGs found by IPA in 14 pairwise contrasts of liver transcriptomes from embryos (E) and hatchlings (H). The list of annotated DEGs (FDR ≤ 0.05) for each developmental age was used to make 14 meaningful pairwise contrasts across embryos and hatchlings ages. An Excel file was generated for each contrast, and subsequently used as the input file for Ingenuity® Pathway Analysis (IPA). “Analysis Ready” (AR) genes are DEGs (AR-DEGs) that map to the Ingenuity® Knowledge Base. An annotated list of AR-DEGs for each of the 14 contrasts is provided in Additional file 3

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BMC Genomics

ISSN: 1471-2164

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