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Table 3 List of SNPs and relative expressions of transcripts with Ka/Ks > 2 and significantly differential expression

From: Differential genetic responses to the stress revealed the mutation-order adaptive divergence between two sympatric ginger species

  

SNPs

FPKM

Transcript Id

Length

Missense

Synonymous

Ka/Ks

Z. kawagoii (zk)

Z. shuanglongensis (zs)

log2FC (zs-zk)

p (zs-zk)

DN30045_c2_g6_i1

386

6

1

3

5.12

26.67

2.29

0.038

DN32090_c10_g8_i1

634

5

1

2.5

0

17.47

7.97

1.80E-05

DN32090_c10_g5_i9

722

5

1

2.5

0.44

27.29

5.67

1.09E-06

DN31496_c1_g1_i13

839

16

2

4

5.62

31.54

2.36

0.002

DN32036_c1_g2_i5

1148

13

2

3.3

9.84

1.85

−2.61

0.002

DN31537_c1_g4_i6

1778

12

2

3

14.86

4.92

−1.77

0.016

DN31659_c3_g1_i5

2061

6

1

3

20.03

4.67

−2.27

0.002

DN28640_c0_g2_i1

2844

6

1

3

5.84

1.72

−1.91

0.013

DN30152_c4_g8_i1

403

5

1

2.5

55.55

2.79

−4.29

1.13E-04

DN26431_c0_g1_i1

1066

6

1

3

22.23

3.39

−2.85

3.77E-04

DN30898_c1_g1_i2

1872

5

1

2.5

11.4

3.66

−1.8

0.015

DN32090_c10_g5_i10

1862

46

7

3.3

7.98

24.08

1.44

0.039

DN31607_c0_g4_i2

2162

11

2

2.8

27.88

5.09

−2.6

3.37E-04

DN31888_c2_g1_i14

465

7

1

3.5

2.15

83.59

5.16

5.25E-07

DN26862_c0_g2_i1

1481

7

1

3.5

1.62

6.52

1.85

0.032