Table 1 Summary of Oreochromis niloticus transcriptome sequence data
Sample ID | Tissue | Treatment | Total raw read pairs (M) | Average raw quality score | Cleaned uniquely mapped read pairs (M) |
|---|---|---|---|---|---|
HD18-G | Gill | HD24 | 24.09 | 34.05 | 17.72 |
HD19-G | Gill | HD24 | 24.66 | 34.06 | 18.08 |
HD20-G | Gill | HD24 | 25.72 | 34.01 | 18.8 |
HD21-G | Gill | HD24 | 29.76 | 33.94 | 21.2 |
HD23-G | Gill | HD24 | 26.95 | 34.11 | 19.42 |
HD24-G | Gill | HD48 | 26.44 | 33.94 | 18.93 |
HD25-G | Gill | HD48 | 24.84 | 34.03 | 18.38 |
HD26-G | Gill | HD48 | 24.47 | 34.02 | 17.85 |
HD27-G | Gill | HD48 | 25.01 | 33.93 | 17.42 |
HD28-G | Gill | HD48 | 23.43 | 34.03 | 17.23 |
HDC10-G | Gill | HDC24 | 23.36 | 34.06 | 16.99 |
HDC6-G | Gill | HDC24 | 26.95 | 34.01 | 19.4 |
HDC7-G | Gill | HDC24 | 25.48 | 34.06 | 18.65 |
HDC8-G | Gill | HDC24 | 25.72 | 33.87 | 17.96 |
HDC9-G | Gill | HDC24 | 24.13 | 34.02 | 17.37 |
HDC11-G | Gill | HDC48 | 26.36 | 34.03 | 18.69 |
HDC12-G | Gill | HDC48 | 24.00 | 34.06 | 17.73 |
HDC13-G | Gill | HDC48 | 25.20 | 34.04 | 18.02 |
HDC14-G | Gill | HDC48 | 25.42 | 33.75 | 18.51 |
HDC15-G | Gill | HDC48 | 24.83 | 34.03 | 18.09 |
LD28-G | Gill | LD24 | 25.17 | 34.09 | 18.45 |
LD29-G | Gill | LD24 | 25.65 | 33.99 | 18.24 |
LD30-G | Gill | LD24 | 26.78 | 34.06 | 19.89 |
LD31-G | Gill | LD24 | 25.46 | 33.98 | 18.61 |
LD32-G | Gill | LD24 | 25.32 | 33.39 | 18.43 |
LD35-G | Gill | LD48 | 26.99 | 33.99 | 19.82 |
LD36-G | Gill | LD48 | 25.37 | 34.03 | 18.63 |
LD37-G | Gill | LD48 | 26.28 | 33.70 | 19.2 |
LD38-G | Gill | LD48 | 28.75 | 34.03 | 21.1 |
LD39-G | Gill | LD48 | 23.87 | 33.94 | 17.41 |
LDC10-G | Gill | LDC24 | 28.68 | 34.06 | 20.96 |
LDC6-G | Gill | LDC24 | 25.97 | 34.08 | 19.15 |
LDC7-G | Gill | LDC24 | 25.69 | 33.88 | 18.59 |
LDC8-G | Gill | LDC24 | 25.99 | 34.08 | 19.07 |
LDC9-G | Gill | LDC24 | 23.15 | 33.97 | 16.86 |
LDC11-G | Gill | LDC48 | 30.69 | 33.99 | 22.33 |
LDC12-G | Gill | LDC48 | 26.03 | 33.95 | 18.82 |
LDC13-G | Gill | LDC48 | 25.36 | 33.89 | 18.23 |
LDC14-G | Gill | LDC48 | 26.60 | 34.03 | 19.28 |
LDC15-G | Gill | LDC48 | 26.98 | 33.79 | 19.19 |
HD18-SK | Skin | HD24 | 25.74 | 33.55 | 18.85 |
HD19-SK | Skin | HD24 | 24.29 | 33.95 | 18.22 |
HD20-SK | Skin | HD24 | 25.23 | 33.90 | 18.98 |
HD21-SK | Skin | HD24 | 32.66 | 33.95 | 24.31 |
HD23-SK | Skin | HD24 | 24.46 | 33.95 | 18.43 |
HD24-SK | Skin | HD48 | 23.52 | 33.82 | 17.29 |
HD25-SK | Skin | HD48 | 24.95 | 33.90 | 18.49 |
HD26-SK | Skin | HD48 | 24.40 | 34.01 | 18.67 |
HD27-SK | Skin | HD48 | 24.86 | 33.85 | 17.71 |
HD28-SK | Skin | HD48 | 23.02 | 33.91 | 17.14 |
HDC10-SK | Skin | HDC24 | 24.51 | 33.89 | 18.09 |
HDC6-SK | Skin | HDC24 | 26.77 | 33.95 | 19.59 |
HDC7-SK | Skin | HDC24 | 24.29 | 33.99 | 18.05 |
HDC8-SK | Skin | HDC24 | 26.79 | 33.90 | 18.97 |
HDC9-SK | Skin | HDC24 | 27.00 | 33.99 | 20.34 |
HDC11-SK | Skin | HDC48 | 26.47 | 33.87 | 18.53 |
HDC12-SK | Skin | HDC48 | 20.60 | 33.88 | 15.28 |
HDC13-SK | Skin | HDC48 | 23.63 | 33.82 | 17.51 |
HDC14-SK | Skin | HDC48 | 23.52 | 33.73 | 17.2 |
HDC15-SK | Skin | HDC48 | 25.09 | 33.88 | 18.38 |
LD28-SK | Skin | LD24 | 24.84 | 34.04 | 18.65 |
LD29-SK | Skin | LD24 | 25.10 | 33.93 | 18.08 |
LD30-SK | Skin | LD24 | 25.33 | 34.03 | 19.42 |
LD31-SK | Skin | LD24 | 23.97 | 34.07 | 18.2 |
LD32-SK | Skin | LD24 | 26.73 | 33.78 | 20.28 |
LD35-SK | Skin | LD48 | 22.38 | 34.02 | 17.2 |
LD36-SK | Skin | LD48 | 24.52 | 33.94 | 18.2 |
LD37-SK | Skin | LD48 | 26.56 | 33.94 | 20.19 |
LD38-SK | Skin | LD48 | 25.28 | 33.99 | 19.32 |
LD39-SK | Skin | LD48 | 25.97 | 33.87 | 19.69 |
LDC10-SK | Skin | LDC24 | 25.14 | 33.99 | 18.95 |
LDC6-SK | Skin | LDC24 | 24.14 | 34.01 | 18.12 |
LDC7-SK | Skin | LDC24 | 25.76 | 33.79 | 18.87 |
LDC8-SK | Skin | LDC24 | 25.81 | 33.99 | 19.23 |
LDC9-SK | Skin | LDC24 | 26.03 | 33.97 | 19.29 |
LDC11-SK | Skin | LDC48 | 25.62 | 34.04 | 19.09 |
LDC12-SK | Skin | LDC48 | 26.02 | 33.95 | 19.55 |
LDC13-SK | Skin | LDC48 | 30.93 | 34.03 | 23.1 |
LDC14-SK | Skin | LDC48 | 25.60 | 34.05 | 19.46 |
LDC15-SK | Skin | LDC48 | 26.13 | 33.96 | 18.07 |