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Table 3 Summary of the initially selected candidate of thermal stress biomarkers for qRT-PCR development using gill tissue. Presented for each gene are the temperature stress response signatures, EST ID for the 44 K cGRASP microarray, and Atlantic salmon gene ID. The symbol ‘x’ indicates that the gene was included in the thermal response signature for the specified analysis

From: Developing specific molecular biomarkers for thermal stress in salmonids

Gene Name

Gene Symbol

EST ID

Gene ID

Chromosome

Intersect 2007, 2008, 2009 (CS0101i)

Jeffries et al. [9] (ES0013)

2007 Sockeye (EX0102a)

2008 Sockeye (EX0103a)

2009 Pink (EX0101a)

Jeffries et al. [30] publication: (16 K)

Quinn et al. [32] publication Table S1 (32 K)

Anttila et al. [12] publication Table S1 (16 K)

Quinn et al. [33] publication Table S2 (32 K)

Lewis et al. [34] (24 h)

Lewis et al. [34] (4 h)

Protein folding and rescue

Serpin H1 precursor

SERPINH1

C044R036

106,581,278

20

x

x

x

x

x

      
 

C265R019

  

x

x

x

x

x

      
 

C205R085

  

x

x

x

x

x

      
 

C101R077

  

x

          
 

CA063723

       

x

x

    
 

C009R155

106,613,072

9

x

x

x

x

x

      
 

C236R132

  

x

x

x

x

x

      

Heat shock protein HSP 90-alpha

HSP90AA1

C020R155

106,608,136

6

x

x

x

 

x

      
 

DY732008

        

x

    

Heat shock protein 90 kDa alpha (cytosolic) class B member 1

HSP90AB1

C101R112

100,136,360

15

x

          
 

CB493619

       

x

x

x

x

  
 

CB501628

       

x

x

x

x

  
 

CA767842

        

x

x

   
 

CB502806

        

x

    

Heat shock protein HSP 90-alpha. 1

HSP90AA1

C198R091

106,571,588

15

x

  

x

       
 

CB498021

        

x

x

x

 

x

Heat shock protein HSP 90-alpha

HSP90AA1

C182R027

100,380,418

15

x

x

x

x

       
 

C015R121

  

x

 

x

x

       
 

CA062155

        

x

x

x

  

Heat shock cognate 70 kDa protein

HSC71

C059R036

106,613,013

9

  

x

 

x

      

Heat shock 70 kDa protein

HSP70

C035R126

106,607,232

6

  

x

x

       
 

C185R016

    

x

x

       
 

C229R092

    

x

x

       
 

C249R043

    

x

x

       

FK506-binding protein 10 precursor

FKBP10

C171R003

106,601,011

3

x

x

x

        
 

C067R011

106,607,277

6

x

x

x

x

       
 

C165R115

  

x

x

x

        
 

C124R099

  

x

x

x

        
 

C154R080

  

x

x

         
 

C070R119

106,579,165

19

x

          
 

C014R004

  

x

          

Protein disulfide-isomerase A4 precursor

PDIA4

C263R094

106,578,385

19

x

          

Oxidative stress/ion binding/signal transduction

  

Selenoprotein W

SEPW1

C035R144

106,563,412

11

x

x

x

x

       
 

C258R108

  

x

x

x

x

       
 

C052R159

  

x

x

x

x

       
 

C155R164

  

x

x

 

x

       
 

C142R109

  

x

  

x

       

Mitogen-activated protein kinase kinase kinase 14

MAP3K14

C014R149

100,380,862

3

x

x

 

x

       
 

C060R057

  

x

  

x

       

Parkinson disease (autosomal recessive, early onset) 7 (Protein DJ-1)

PARK7

C246R153

100,136,349

22

x

x

         

Metabolic processes

Cytochrome C oxidase

COX6B1

C193R155

106,579,249

19

x

          
 

C074R104

   

x

         
 

C042R086

106,579,245

19

 

x

         
 

C149R170

   

x

         

Mannose-P-dolichol utilization defect 1 protein

MPDU1

C007R028

106,608,952

7

x

x

x

x

       

Isocitrate dehydrogenase 3 (NAD+) beta

IDH3B

C125R081

106,565,197

12

x

x

x

        

Transcription/translation/protein transport

Eukaryotic translation initiation factor 4A, isoform 2

EIF4A2

C096R117

106,568,752

14

x

x

x

 

x

      
 

C092R059

  

x

  

x

       

Eukaryotic translation initiation factor 4E nuclear import factor 1

EIF4ENIF1

C240R154

100,196,839

12

x

x

x

x

       

Splicing factor, arginine/serine-rich 9

SFRS9

C025R120

100,195,385

1

x

x

x

x

x

      
 

C074R026

  

x

x

x

x

x

      

Splicing factor, arginine/serine-rich 2

SFRS2

C078R152

106,601,525

3

x

x

x

x

x

      
 

C187R068

  

x

x

x

 

x

      
 

C254R016

  

x

x

x

 

x

      
 

C036R063

  

x

x

x

x

       
 

C084R083

  

x

x

x

        
 

C174R079

  

x

 

x

        
 

CA064151

         

x

   
 

CB493433

        

x

    
 

EG927609

        

x

    

Eukaryotic translation elongation factor 2

EEF2

C262R107

106,569,524

14

x

  

x

       
 

CB498321

       

x

x

    
 

C102R083

106,600,009

3

x

x

x

x

       

Cold-inducible RNA-binding protein B

CIRBP

C026R122

106,613,740

10

x

   

x

      
 

CA041959

         

x

   
 

C251R142

106,613,741

10

x

 

x

        
 

CA048095

       

x

 

x

   
 

CB499204

         

x

   
 

C107R130

106,573,600

16

x

x

x

x

x

      
 

C192R015

106,573,597

16

x

          

Sec1 family domain-containing protein 1

SCFD1

C205R010

100,380,743

1

x

x

x

x

       

Growth regulation

Tubulin alpha-1A chain

TUBA1A

C036R054

100,196,438

16

x

          
 

C075R011

             
 

C062R114

106,573,955

16

x

          

Tubulin alpha chain, testis-specific

TUBA1A

C145R015

106,562,989

11

x

 

x

        

Cell cycle and apoptosis

Serine/threonine-protein kinase Nek4

NEK4

C163R137

106,565,859

12

x

  

x

       

DNA repair and cell structure

Keratinocytes-associated transmembrane protein 2 precursor

KCT2

C102R089

100,194,831

13

x

x

         

Ubiquitin-conjugating enzyme E2 Q2

UBE2Q2

C182R024

106,587,229

26

x

x

 

x

       
 

C089R055

  

x

  

x

       

Transmembrane transport

Transmembrane protein 185

zgc:63572

C160R143

106,563,673

11

x

x

x

        

Protein transporter activity

AP-3 complex subunit sigma-1

AP3S1

C061R023

106,585,846

24

x

x

x

        

Co-repressor of transcription

Zinc finger MYND domain-containing protein 11

ZMYND11

C190R138

100,380,823

3

x

 

x

x

x

      
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