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Table 3 Summary of the initially selected candidate of thermal stress biomarkers for qRT-PCR development using gill tissue. Presented for each gene are the temperature stress response signatures, EST ID for the 44 K cGRASP microarray, and Atlantic salmon gene ID. The symbol ‘x’ indicates that the gene was included in the thermal response signature for the specified analysis

From: Developing specific molecular biomarkers for thermal stress in salmonids

Gene Name Gene Symbol EST ID Gene ID Chromosome Intersect 2007, 2008, 2009 (CS0101i) Jeffries et al. [9] (ES0013) 2007 Sockeye (EX0102a) 2008 Sockeye (EX0103a) 2009 Pink (EX0101a) Jeffries et al. [30] publication: (16 K) Quinn et al. [32] publication Table S1 (32 K) Anttila et al. [12] publication Table S1 (16 K) Quinn et al. [33] publication Table S2 (32 K) Lewis et al. [34] (24 h) Lewis et al. [34] (4 h)
Protein folding and rescue
Serpin H1 precursor SERPINH1 C044R036 106,581,278 20 x x x x x       
  C265R019    x x x x x       
  C205R085    x x x x x       
  C101R077    x           
  CA063723         x x     
  C009R155 106,613,072 9 x x x x x       
  C236R132    x x x x x       
Heat shock protein HSP 90-alpha HSP90AA1 C020R155 106,608,136 6 x x x   x       
  DY732008          x     
Heat shock protein 90 kDa alpha (cytosolic) class B member 1 HSP90AB1 C101R112 100,136,360 15 x           
  CB493619         x x x x   
  CB501628         x x x x   
  CA767842          x x    
  CB502806          x     
Heat shock protein HSP 90-alpha. 1 HSP90AA1 C198R091 106,571,588 15 x    x        
  CB498021          x x x   x
Heat shock protein HSP 90-alpha HSP90AA1 C182R027 100,380,418 15 x x x x        
  C015R121    x   x x        
  CA062155          x x x   
Heat shock cognate 70 kDa protein HSC71 C059R036 106,613,013 9    x   x       
Heat shock 70 kDa protein HSP70 C035R126 106,607,232 6    x x        
  C185R016      x x        
  C229R092      x x        
  C249R043      x x        
FK506-binding protein 10 precursor FKBP10 C171R003 106,601,011 3 x x x         
  C067R011 106,607,277 6 x x x x        
  C165R115    x x x         
  C124R099    x x x         
  C154R080    x x          
  C070R119 106,579,165 19 x           
  C014R004    x           
Protein disulfide-isomerase A4 precursor PDIA4 C263R094 106,578,385 19 x           
Oxidative stress/ion binding/signal transduction   
Selenoprotein W SEPW1 C035R144 106,563,412 11 x x x x        
  C258R108    x x x x        
  C052R159    x x x x        
  C155R164    x x   x        
  C142R109    x    x        
Mitogen-activated protein kinase kinase kinase 14 MAP3K14 C014R149 100,380,862 3 x x   x        
  C060R057    x    x        
Parkinson disease (autosomal recessive, early onset) 7 (Protein DJ-1) PARK7 C246R153 100,136,349 22 x x          
Metabolic processes
Cytochrome C oxidase COX6B1 C193R155 106,579,249 19 x           
  C074R104     x          
  C042R086 106,579,245 19   x          
  C149R170     x          
Mannose-P-dolichol utilization defect 1 protein MPDU1 C007R028 106,608,952 7 x x x x        
Isocitrate dehydrogenase 3 (NAD+) beta IDH3B C125R081 106,565,197 12 x x x         
Transcription/translation/protein transport
Eukaryotic translation initiation factor 4A, isoform 2 EIF4A2 C096R117 106,568,752 14 x x x   x       
  C092R059    x    x        
Eukaryotic translation initiation factor 4E nuclear import factor 1 EIF4ENIF1 C240R154 100,196,839 12 x x x x        
Splicing factor, arginine/serine-rich 9 SFRS9 C025R120 100,195,385 1 x x x x x       
  C074R026    x x x x x       
Splicing factor, arginine/serine-rich 2 SFRS2 C078R152 106,601,525 3 x x x x x       
  C187R068    x x x   x       
  C254R016    x x x   x       
  C036R063    x x x x        
  C084R083    x x x         
  C174R079    x   x         
  CA064151           x    
  CB493433          x     
  EG927609          x     
Eukaryotic translation elongation factor 2 EEF2 C262R107 106,569,524 14 x    x        
  CB498321         x x     
  C102R083 106,600,009 3 x x x x        
Cold-inducible RNA-binding protein B CIRBP C026R122 106,613,740 10 x     x       
  CA041959           x    
  C251R142 106,613,741 10 x   x         
  CA048095         x   x    
  CB499204           x    
  C107R130 106,573,600 16 x x x x x       
  C192R015 106,573,597 16 x           
Sec1 family domain-containing protein 1 SCFD1 C205R010 100,380,743 1 x x x x        
Growth regulation
Tubulin alpha-1A chain TUBA1A C036R054 100,196,438 16 x           
  C075R011              
  C062R114 106,573,955 16 x           
Tubulin alpha chain, testis-specific TUBA1A C145R015 106,562,989 11 x   x         
Cell cycle and apoptosis
Serine/threonine-protein kinase Nek4 NEK4 C163R137 106,565,859 12 x    x        
DNA repair and cell structure
Keratinocytes-associated transmembrane protein 2 precursor KCT2 C102R089 100,194,831 13 x x          
Ubiquitin-conjugating enzyme E2 Q2 UBE2Q2 C182R024 106,587,229 26 x x   x        
  C089R055    x    x        
Transmembrane transport
Transmembrane protein 185 zgc:63572 C160R143 106,563,673 11 x x x         
Protein transporter activity
AP-3 complex subunit sigma-1 AP3S1 C061R023 106,585,846 24 x x x         
Co-repressor of transcription
Zinc finger MYND domain-containing protein 11 ZMYND11 C190R138 100,380,823 3 x   x x x