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Table 2 Top 20 operons exhibiting the shortest mRNA half-lives in G. oxydans and their assigned gene expression values FPKM. The arrow lines indicate operon genes and genomic orientation.

From: Global mRNA decay and 23S rRNA fragmentation in Gluconobacter oxydans 621H

  locus tag / operon annotation operon half-life Ø (min) half-life (min) FPKM
| GOX1310a F1Fo ATP synthase subunit delta 3.1 3.7 6320
| GOX1311a F1Fo ATP synthase subunit alpha   3.0 1780
| GOX1312a F1Fo ATP synthase subunit gamma   3.1 1232
| GOX1313a F1Fo ATP synthase subunit beta   2.9 1651
GOX1314a F1Fo ATP synthase epsilon chain   3.1 6950
| GOX1737 rod shape-determining protein MreB 2.8 2.4 908
| GOX1738 rod shape-determining protein MreC   2.8 383
GOX1739 hypothetical protein   3.0 93
GOX1110a F1Fo ATP synthase subunit b’ 2.8 2.9 937
| GOX1111a F1Fo ATP synthase subunit b   2.9 1600
| GOX1112a F1Fo ATP synthase C chain   2.9 1743
| GOX1113a F1Fo ATP synthase subunit a   2.4 1911
| GOX0149 cell division protein MraZ 2.8 3.0 2124
| GOX0150 SAM-dependent methytransferase   2.8 528
GOX0151 hypothetical protein   2.6 255
GOX1427 FAD-dependent thymidylate synthase 2.7 2.7 1121
GOX0476 putative oxidoreductase 2.7 2.9 658
| GOX0477 hypothetical protein   2.5 847
| GOX0478 putative oxidoreductase   2.8 1202
GOX1596 hypothetical protein 2.7 2.7 119
GOX2462 transcriptional regulator 2.7 2.7 4866
GOX0607 D-alanyl-D-alanine carboxypeptidase 2.7 2.7 1540
| GOX1430 serine protease 2.7 2.8 170
GOX1431 hypothetical protein   2.6 336
| GOX0024 undecaprenyl pyrophosphate phosphatase 2.6 2.8 198
GOX0025 amino acid permease   2.5 142
GOX2207 methylenetetrahydrofolate reductase 2.6 2.6 547
GOX0649 sugar-proton symporter 2.6 2.6 364
GOX2378 short chain alcohol dehydrogenase 2.6 2.6 301
GOX1151 hypothetical protein 2.5 2.5 2854
GOX1696 hypothetical protein 2.5 2.5 35
GOX2067 manganese transport protein MntH 2.5 2.5 526
GOX0942 hypothetical protein 2.5 2.5 178
GOX1652 heme exporter protein C 2.4 2.4 323
GOX0666 outer membrane receptor for ferric iron uptake 2.4 2.4 222
GOX1426 hypothetical protein 2.4 2.4 577
  1. a) For the F1Fo ATP synthase encoded by two operons the data of the operon GOX1310–14, which was close to the top 20, were also included