Skip to main content

Table 2 Principal genome characteristics for T. conorhini 025E, T. rangeli AM80, T. cruzi G and T. cruzi CL

From: Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence

 

T. conorhini 025E

T. rangeli AM80

T. cruzi G

T. cruzi CL ESM-like

T. cruzi CL NonESM

T. cruzi CL Unassigned

Sum of # bases in all contigs (Mbp)a

21.34

21.16

25.18

26.77

27.98

10.26

GC Content (%)

57.24

51.96

50.06

50.31

50.44

53.45

Coding Region (Mbp)

14.25

13.61

16.23

14

14.77

5.85

Coding Region (%)

66.78

64.32

64.46

52.30

52.79

57.02

Number of Protein-coding Genes

10,154

10,109

12,712

12,229

13,066

6993

Orthologous groupsb

9055

9140

10,103

19,790

Total number of contigs

1660

1080

1452

2387

2290

3087

N50 length

24,561

43,151

74,655

73,547

83,750

8012

N50 No. contigs

257

157

91

95

95

294

N50 avg. contig length

41,520

67,443

138,662

141,304

147,390

17,455

Genes w/ Pfam hits

8610

7187

8055

7425

7734

3744

  1. aRepetitive and complex regions may not be uniquely assembled
  2. bGene Clusters (orthologs, paralogs, singletons) derived from an OrthoFinder run using all four species