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Table 2 Conservation of lncRNAs from B. napus (Bna) in A. thaliana (Ath), B. oleracea (Bol) and B. rapa (Bra)

From: Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus

Method

Comparison

Bna_An

Bna_Cn

Total*

Sequence-baseda

Bna vs Ath

142

172

316 (2)

Bna vs Bol

284

780

1074 (10)

Bna vs Bra

441

284

731 (6)

Position-basedb

Bna vs Ath

1767

2160

3929 (2)

Bna vs Bol

763

1338

2101

Bna vs Bra

822

907

1729

  1. a: sequences with homologous coverage > 40%, E_value <1e-5 and identity > 50%;
  2. b: at least one upstream and one downstream genes in the synteny region;
  3. *: numbers in parentheses indicate the number of lncRNAs whose genomic location is undetermined