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Table 3 List of target genes of known miRs and their differential expression

From: Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

MiR Putative target genes
Name Sf strain Regulated on Log2FC aPredicted Targets Down or up regulated targets Down-regulated bAmong down and up- regulated genes Log2FC
 miR-34 2.32 321 38 28 take-out
GSSPFG00021718001-RA
cuticular proteins
−4.22
GSSPFG00000626001-RA −3.24
GSSPFG00013845001-RA −1.6
GSSPFG00010502001-RA
subunit DSS1 of 26S proteasome
−1.21
GSSPFG00027010001-RA −2.14
 miR-190 2.07 479 46 25 take-out
GSSPFG00021718001-RA
cuticular protein
−4.22
GSSPFG00005155001-RA
acyl-CoA desaturase
−3.54
GSSPFG00006314001-RA
osiris 9A
−6.54
GSSPFG00012033001-RA −4.71
 miR-1a-5p 1.33 524 46 18 Serine proteinase
GSSPFG00014426001-RA
−3.38
 miR-998 − 3.33 229 31 10 sodium- and chloride-dependent glycine transporter 1-like
GSSPFG00018036001-RA
facilitated trehalose transporter Tret1
2.61
GSSPFG00023681001-RA
Spermine oxidase
1.31
GSSPFG00025432001-RA 3.02
 miR-278 −2.50 91 8 4 integrin alpha-PS2
GSSPFG00025987001
1.15
 miR-263a-5p −2.18 436 56 27 sodium- and chloride-dependent glycine transporter 1-like
GSSPFG00018036001-RA
facilitated trehalose transporter Tret1
2.61
GSSPFG00023681001-RA
Spermine oxidase
1.31
GSSPFG00025432001-RA 3.02
 miR-10-5p −1.96 151 20 12 sodium- and chloride-dependent glycine transporter 1-like
GSSPFG00018036001-RA
facilitated trehalose transporter Tret1
2.6
GSSPFG00012081001-RA 1.61
Name Host-plant Regulated in Log2FC aPredicted Targets Down and up- regulated targets Down-regulated bAmong down and up- regulated genes Log2FC
 miR-34 1.72 321 30 18 transcription factor ap-2
GSSPFG00001565001-RA
lysine-specific demethylase 2B
−1.3
GSSPFG00019875001-RA
graves disease carrier protein
−1.24
GSSPFG00028641001-RA −1.08
 miR-263a-5p −2.69 436 43 26 unknown secreted protein [Papilio polytes]
GSSPFG00016698001-RA
cuticular protein RR-1 motif 26
1.96
GSSPFG00021712001-RA 1.54
 miR-10-5p −2.48 151 25 7 proton-coupled folate transporter
GSSPFG00020391001-RA
facilitated trehalose transporter Tret1-like
1.11
GSSPFG00012081001-RA 1.02
 miR-278-5p −1.36 91 7 3 zinc finger protein 347
GSSPFG00017383001-RA
0.76
  1. Clipart for rice is available by Google [Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0)], via Wikimedia Commons, https://upload.wikimedia.org/wikipedia/commons/5/58/Emoji_u1f33e.svg and for corn by Spedona - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=5310440
  2. aTarget genes were predicted using Targetscan software. bThe predictions that had been confirmed by at least one other software among miRanda, Rna22 or miRmap and that had been shown to be expressed and regulated in parallel Reciprocal Transplant experiments [7] are listed with the corresponding foldchange. The complete target gene list figure in Additional file 10: Excel file S5 and Additional file 11: Excel file S6. Pictures of S. frugiperda larvae on plants were taken by Marion Orsucci who gave the written permission to use and adapt them