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Table 3 List of target genes of known miRs and their differential expression

From: Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

MiR

Putative target genes

Name

Sf strain

Regulated on

Log2FC

aPredicted Targets

Down or up regulated targets

Down-regulated

bAmong down and up- regulated genes

Log2FC

 miR-34

2.32

321

38

28

take-out

GSSPFG00021718001-RA

cuticular proteins

−4.22

GSSPFG00000626001-RA

−3.24

GSSPFG00013845001-RA

−1.6

GSSPFG00010502001-RA

subunit DSS1 of 26S proteasome

−1.21

GSSPFG00027010001-RA

−2.14

 miR-190

2.07

479

46

25

take-out

GSSPFG00021718001-RA

cuticular protein

−4.22

GSSPFG00005155001-RA

acyl-CoA desaturase

−3.54

GSSPFG00006314001-RA

osiris 9A

−6.54

GSSPFG00012033001-RA

−4.71

 miR-1a-5p

1.33

524

46

18

Serine proteinase

GSSPFG00014426001-RA

−3.38

 miR-998

− 3.33

229

31

10

sodium- and chloride-dependent glycine transporter 1-like

GSSPFG00018036001-RA

facilitated trehalose transporter Tret1

2.61

GSSPFG00023681001-RA

Spermine oxidase

1.31

GSSPFG00025432001-RA

3.02

 miR-278

−2.50

91

8

4

integrin alpha-PS2

GSSPFG00025987001

1.15

 miR-263a-5p

−2.18

436

56

27

sodium- and chloride-dependent glycine transporter 1-like

GSSPFG00018036001-RA

facilitated trehalose transporter Tret1

2.61

GSSPFG00023681001-RA

Spermine oxidase

1.31

GSSPFG00025432001-RA

3.02

 miR-10-5p

−1.96

151

20

12

sodium- and chloride-dependent glycine transporter 1-like

GSSPFG00018036001-RA

facilitated trehalose transporter Tret1

2.6

GSSPFG00012081001-RA

1.61

Name

Host-plant

Regulated in

Log2FC

aPredicted Targets

Down and up- regulated targets

Down-regulated

bAmong down and up- regulated genes

Log2FC

 miR-34

1.72

321

30

18

transcription factor ap-2

GSSPFG00001565001-RA

lysine-specific demethylase 2B

−1.3

GSSPFG00019875001-RA

graves disease carrier protein

−1.24

GSSPFG00028641001-RA

−1.08

 miR-263a-5p

−2.69

436

43

26

unknown secreted protein [Papilio polytes]

GSSPFG00016698001-RA

cuticular protein RR-1 motif 26

1.96

GSSPFG00021712001-RA

1.54

 miR-10-5p

−2.48

151

25

7

proton-coupled folate transporter

GSSPFG00020391001-RA

facilitated trehalose transporter Tret1-like

1.11

GSSPFG00012081001-RA

1.02

 miR-278-5p

−1.36

91

7

3

zinc finger protein 347

GSSPFG00017383001-RA

0.76

  1. Clipart for rice is available by Google [Apache License 2.0 (http://www.apache.org/licenses/LICENSE-2.0)], via Wikimedia Commons, https://upload.wikimedia.org/wikipedia/commons/5/58/Emoji_u1f33e.svg and for corn by Spedona - Own work, CC BY-SA 3.0, https://commons.wikimedia.org/w/index.php?curid=5310440
  2. aTarget genes were predicted using Targetscan software. bThe predictions that had been confirmed by at least one other software among miRanda, Rna22 or miRmap and that had been shown to be expressed and regulated in parallel Reciprocal Transplant experiments [7] are listed with the corresponding foldchange. The complete target gene list figure in Additional file 10: Excel file S5 and Additional file 11: Excel file S6. Pictures of S. frugiperda larvae on plants were taken by Marion Orsucci who gave the written permission to use and adapt them
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BMC Genomics

ISSN: 1471-2164

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