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Table 3 The protein variation in four Gossypium mitogenomes

From: The comparison of four mitochondrial genomes reveals cytoplasmic male sterility candidate genes in cotton

Gene

Len

Var

IDY

Loc

2074A

2074S

E5903

2074B

NSM

SM

aa-Var

N-S

P-S

N-S

P-S

N-S

P-S

N-S

P-S

atp4

585

1

99.8

222

ttT

Phe

ttT

Phe

ttT

Phe

ttC

Phe

1

0

 

atp8

465

1

99.8

171

agA

Arg

agA

Arg

agA

Arg

agC

Ser

0

3

Ser-Arg

atp9

225

1

99.6

27

ggA

Gly

ggT

Gly

ggT

Gly

ggT

Gly

1

0

 

ccmB

621

1

99.8

11

cAt

His

cTt

Leu

cTt

Leu

cTt

Leu

0

1

Leu-His

ccmFC

1323

1

99.8

585

gtC

Val

gtC

Val

gtC

Val

gtG

Val

   

cox1

1593

3

99.8

415

Acc

Thr

Acc

Thr

Ccc

Pro

Acc

Thr

  

Thr-Pro

960

atA

Ile

atA

Ile

atA

Ile

atC

Ile

   

1428

atA

Ile

atA

Ile

atA

Ile

atC

Ile

2

1

 

cox2

783

1

99.9

481

Tta

Leu

Tta

Leu

Tta

Leu

Cta

Leu

1

0

 

cox3

798

4

99.6

157

Ctc

Leu

Atc

Ile

Atc

Ile

Ctc

Leu

  

Leu-Ile

294

ttT

Pro

ttT

Pro

ttT

Pro

ttG

Leu

  

Pro-Leu

295

Gct

Ala

Gct

Ala

Gct

Ala

Tct

Ser

0

4

Ala-Ser

matR

1968

1

99.9

1858

Aaa

Lys

Aaa

Lys

Aaa

Lys

Caa

Gln

0

3

Gln-Lys

nad2

1467

1

99.9

783

tcG

Ser

tcG

Ser

tcG

Ser

tcT

Ser

1

0

 

nad3

357

1

99.7

317

tCt

Ser

tCt

Ser

tCt

Ser

tTt

Phe

0

1

Ser-Phe

nad4

1488

3

99.8

33

gaT

Asp

gaT

Asp

gaT

Asp

gaC

Asp

   

240

atC

Ile

atC

Ile

atC

Ile

atA

Ile

   

242

aAt

Asn

aAt

Asn

aAt

Asn

aTT

Ile

2

1

Asn-Ile

nad7

1185

1

99.9

24

atC

Ile

atC

Ile

atC

Ile

atA

Ile

1

0

 

rpl2

1005

2

99.8

45

ttG

Leu

ttG

Leu

ttG

Leu

ttT

Phe

  

Phe-Leu

292

Ctc

Leu

Ctc

Leu

Ctc

Leu

Atc

Ile

0

6

Ile-Leu

rpl5

582

1

99.8

139

Caa

Gln

Caa

Gln

Caa

Gln

Aaa

Lys

0

3

Lys-Gln

rpl10

489

1

99.8

361

Aaa

Lys

Aaa

Lys

Aaa

Lys

Gaa

Glu

0

3

Glu-Lys

rpl16

435

1

99.5

270

gtC

Val

gtC

Val

gtC

Val

gtA

Val

1

0

 

rps3

1707

3

99.8

1670

aAg

Lys

aAg

Lys

aAg

Lys

aGg

Arg

  

Lys-Arg

1676

gGA

Gly

gGA

Gly

gGA

Gly

gAC

Asp

  

Gly-Asp

1678

Cgt

Arg

Cgt

Arg

Cgt

Arg

Ggt

Gly

0

3

Arg-Gly

rps4

1098

1

99.9

535

Caa

Gln

Caa

Gln

Caa

Gln

Aaa

Lys

0

3

 

rps10

333

1

99.4

311

gTC

Val

gAA

Glu

gAA

Glu

gAA

Glu

0

1

Glu-Val

sdh3

435

1

99.8

33

ttC

Phe

ttC

Phe

ttC

Phe

ttA

Leu

0

3

 

nonsynonymous mutation

31

  

10

 

9

 

10

 

7

total

10

36

17

Synonymous mutation

  

1

 

0

 

0

 

10

  1. Note. –Len, length of gene CDS sequence; Var variant sites in fourmitogenomes, IDY identity of gene CDS sequences, Loc location of variant sites, N-S nucleotide sequence, P-S amino acid sequence, Boldface, variant nucleotide, Bold italic variant amino acids, NSM nonsynonymous mutation, SM synonymous mutation, aa-Var amino acidvariation, Boldface mark is mutated base and amino acid