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Table 7 Chimeric ORFs (> 300 bp) presented in 2074S mitogenomes

From: The comparison of four mitochondrial genomes reveals cytoplasmic male sterility candidate genes in cotton

2074S

Length (bp)

Tra-domc

Uni/Rep-seqd

2074B

E5903

Location

Homologous sequencee

Sorf25

660

-a

 

–

*b

down atp4 2192 bp

19 bp, ccmFN

Sorf16

381

1

U5

–

–

 

157 bp, rps3ex2

Sorf1

612

1

U1

–

*

 

No homologous sequence

Sorf26

810

–

 

partial

Partial

 

306–479, other plant mtDNA

Sorf21

450

–

U5

–

*

 

96%, Mimulus guttatus mtDNA

Sorf20

336

–

U5

–

*

 

93%, Mimulus guttatus mtDNA

Sorf17

399

–

U5

–

partial e

 

123–393, 82%, tobacco mtDNA

Sorf15

549

–

up SR2

partial

Partial

 

39–527, 94%, Citrullus lanatus mtDNA

Sorf7

405

–

U3

–

*

 

No homologous sequence

Sorf14

315

1

 

partial

Partial

 

No homologous sequence

Sorf13

327

–

 

–

–

 

36 bp, cox2ex1

Sorf12

339

–

 

partial

Partial

 

No homologous sequence

Sorf9

471

1

up SR2

partial

Partial

 

4–424, 92%, Ricinus communis mtDNA

Sorf6

318

–

 

partial

–

 

1–301, 95%, Phoenix ductylifera mtDNA

Sorf8

357

1

SR1

partial

Partial

down rrn26 19 bp

76 bp, nad7

Sorf4

558

1

SR4

partial

Partial

down atp8 565 bp

45 bp, rps3(1–45)f; 47 bp sdh3

Sorf4–2

558

1

SR4

partial

Partial

up rpl2 444 bp

45 bp, rps3; 47 bp, sdh3

Sorf3

303

–

U1

–

*

 

154–301, 96%, papaya mtDNA

Sorf2

762

6

U1

–

*

 

583–759, 86%, papaya mtDNA

Sorf10

387

–

 

partial

Partial

 

43 bp, nad7

Sorf11

399

–

 

partial

Partial

 

No homologous sequence

Sorf19

309

1

U5

–

*

 

No homologous sequence

Sorf18

720

2

U5

–

*

 

No homologous sequence

Sorf5

300

–

 

–

–

 

98%, other plant mtDNA

Sorf22

354

–

 

partial

Partial

 

167–331, other plant mtDNA

Sorf23

477

2

 

–

–

 

64 bp, rps4

Sorf24

369

–

 

partial

*

up nad5ex4 91bpg

20 bp,ccmFC

Sorf29

867

–

up SR1

partial

–

down cox1 222 bp, up cox3 331 bp

56 bp, atp4(1–56)f

Sorf30

636

–

SR1, U6

–

*

 

No homologous sequence

Sorf28

414

–

 

partial

Partial

 

No homologous sequence

Sorf27

951

3

 

partial

Partial

down rrn5 46 bp

No homologous sequence

  1. Note.–ano detected; *bhave this ORF; cTra-dom: transmembrane domain; dUni/R-seq: unique sequence or repeat sequence; eHomologous sequence contains the sequence of genes in cotton and mitochondrial sequences of other plants. fThe similarity between 1–45bp in Sorf4 and 1–45bp in rps3, 1–56bp in Sorf29 and 1–56bp is 100%; g nad5ex4 is located at 91bp upstream of Sorf24