Skip to main content

Table 1 Comparison of genome assembly results of Sc using four different assemblers

From: Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom

 

Genome size

#Scaffolds

Longest scaffold

Average length

N50

WGS

60.2 M

38.8 K

89.1 K

1.6 K

4.7 K

Platanus

46.9 M

62.1 K

122.6 K

0.8 K

24 K

Allpaths-LG

29.7 M

6.2 K

4.8 K

4.8 K

8.6 K

SOAPdenovo2

52.7 M

150.5 K

0.4 K

0.4 K

0.8 K