Table 4 Comparison of the average read number and genome coverage of five respiratory viruses
From: Metagenomic analysis of viral nucleic acid extraction methods in respiratory clinical samples
Kit | Average sequencing reads (average genome coverage %) | ||||
|---|---|---|---|---|---|
ADV | Flu A | PIV3 | OC43 | HMPV | |
VRMK | 13,391 (70.09) | 16 (2.81) | 149,002 (87.06) | 1910 (0.23) | 148 (14.11) |
MVSK | 9033 (56.50) | 2 (2.45) | 37,395 (75.32) | 1555 (0.23) | / |
RPMK | 5992 (31.42) | 2 (1.20) | 58,338,663 (100.00) | 532 (0.83) | 1130 (33.95) |
RMK | 17,215 (79.32) | 1 (1.80) | 9970 (55.21) | 1615 (0.25) | / |