From: A fast detection of fusion genes from paired-end RNA-seq data
 |  | FusionMap | TRUP | TopHat-Fusion | JAFFA | SOAPfuse | FuSeq |
---|---|---|---|---|---|---|---|
Breast cancer (TP27) | Total | 47 | 0 | 261 | 42 | 61 | 53 |
 | TP | 12 | 0 | 24 | 20 | 24 | 22 |
 | Recall | 0.44 | - | 0.89 | 0.74 | 0.89 | 0.81 |
 | Precision | 0.26 | - | 0.09 | 0.48 | 0.39 | 0.42 |
 | F1 | 0.32 | - | 0.17 | 0.58 | 0.55 | 0.55 |
 | P-value | 0.32 | - | 9.1e-06 | 0.71 | 1 | - |
Breast cancer (TP99) | Total | 47 | 0 | 261 | 42 | 61 | 53 |
 | TP | 22 | 0 | 35 | 28 | 41 | 36 |
 | Recall | 0.22 | - | 0.35 | 0.28 | 0.41 | 0.36 |
 | Precision | 0.47 | - | 0.13 | 0.67 | 0.67 | 0.68 |
 | F1 | 0.30 | - | 0.19 | 0.40 | 0.51 | 0.47 |
 | P-value | 0.32 | - | 1.1e-08 | 1 | 1 | - |
Melanoma | Total | 19 | 0 | 29 | 4 | 108 | 21 |
 | TP | 3 | 0 | 4 | 2 | 10 | 7 |
 | Recall | 0.27 | - | 0.36 | 0.18 | 0.91 | 0.64 |
 | Precision | 0.16 | - | 0.14 | 0.5 | 0.09 | 0.33 |
 | F1 | 0.20 | - | 0.2 | 0.27 | 0.17 | 0.44 |
 | P-value | 0.48 | - | 0.32 | 0.62 | 0.02 | - |
Glioma | Total | 191 | 209 | 308 | 904 | 299 | 188 |
 | TP | 28 | 20 | 29 | 30 | 22 | 29 |
 | Recall | 0.90 | 0.65 | 0.94 | 0.97 | 0.71 | 0.94 |
 | Precision | 0.15 | 0.10 | 0.09 | 0.03 | 0.07 | 0.15 |
 | F1 | 0.25 | 0.17 | 0.12 | 0.05 | 0.13 | 0.26 |
 | P-value | 0.89 | 0.13 | 0.09 | 5.5e-08 | 0.02 | - |