Genome-wide identification and analysis of WD40 proteins in wheat (Triticum aestivum L.)

BMC Genomics

Table 2 Number of stress-responsive TaWD40s under different treatment conditions

Stress, treatment time	Up^a, percentage	Down^a, percentage	Low counts, percentage	Nonzero total read count	Study title
Cold, 2 week	92, 14%	73, 11%	51, 7.8%	657	SRP043554
Heat stress, 1 h	97, 15%	78, 12%	24, 3.7%	647	SRP045409
Heat stress, 6 h	188, 29%	160, 25%	13, 2%	651	SRP045409
Drought stress, 1 h	69, 11%	21, 3.3%	62, 9.6%	646	SRP045409
Drought stress, 6 h	103, 16%	100, 15%	11, 1.7%	646	SRP045409
Drought and heat stresses, 1 h	143, 22%	115, 18%	37, 5.8%	641	SRP045409
Drought and heat stresses, 6 h	181, 28%	150, 23%	0, 0%	646	SRP045409
Powdery mildew pathogen E09, 24 h	25, 3.9%	13, 2%	243, 38%	635	SRP041017
Powdery mildew pathogen E09, 48 h	6, 0.9%	16, 2.5%	0, 0%	636	SRP041017
Powdery mildew pathogen E09, 72 h	2, 0.3%	11, 1.7%	87, 14%	644	SRP041017
Stripe rust pathogen CYR31, 24 h	12, 1.9%	15, 2.4%	97, 15%	632	SRP041017
Stripe rust pathogen CYR31, 48 h	1, 0.2%	3, 0.5%	0, 0%	632	SRP041017
Stripe rust pathogen CYR31, 72 h	3, 0.5%	4, 0.6%	0, 0%	630	SRP041017

^aUpregulated and downregulated TaWD40s were counted when the padj (adjusted p value) was less than 0.05

ISSN: 1471-2164