Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

Table 4 Comparison of enriched GO terms among genes of different classes in C. masuca and C. sinica

GO category	Gene group	C. masuca-specific	C. sinica-specific	shared
BP	SP	20	20	30
	IP	8	13	7
	R	12	11	20
	ID	9	7	9
	SD	7	9	11
MF	SP	12	18	32
	IP	3	6	13
	R	1	4	5
	ID	5	4	3
	SD	3	4	5
CC	SP	9	10	13
	IP	1	7	3
	R	1	2	2
	ID	3	1	2
	SD	3	0	2

Abbreviations: BP biological process, MF molecular function, CC cellular component. gene classes, SP strong purifying selection (Ks ≤ 0.5), IP intermediate purifying selection (0.5 < Ks ≤ 0.9), R relaxed or nearly relaxed selection (0.9 < Ks ≤ 1.1), ID intermediate Darwinian selection (1.1 < Ks ≤ 1.5), SD, strong Darwinian selection (Ks > 1.5). GO enrichment results were obtained using the R package topGO

ISSN: 1471-2164

GO category	Gene group	C. masuca-specific	C. sinica-specific	shared
BP	SP	20	20	30
	IP	8	13	7
	R	12	11	20
	ID	9	7	9
	SD	7	9	11
MF	SP	12	18	32
	IP	3	6	13
	R	1	4	5
	ID	5	4	3
	SD	3	4	5
CC	SP	9	10	13
	IP	1	7	3
	R	1	2	2
	ID	3	1	2
	SD	3	0	2

GO category	Gene group	C. masuca-specific	C. sinica-specific	shared
BP	SP	20	20	30
	IP	8	13	7
	R	12	11	20
	ID	9	7	9
	SD	7	9	11
MF	SP	12	18	32
	IP	3	6	13
	R	1	4	5
	ID	5	4	3
	SD	3	4	5
CC	SP	9	10	13
	IP	1	7	3
	R	1	2	2
	ID	3	1	2
	SD	3	0	2

GO category	Gene group	C. masuca-specific	C. sinica-specific	shared
BP	SP	20	20	30
	IP	8	13	7
	R	12	11	20
	ID	9	7	9
	SD	7	9	11
MF	SP	12	18	32
	IP	3	6	13
	R	1	4	5
	ID	5	4	3
	SD	3	4	5
CC	SP	9	10	13
	IP	1	7	3
	R	1	2	2
	ID	3	1	2
	SD	3	0	2