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Table 4 Comparison of enriched GO terms among genes of different classes in C. masuca and C. sinica

From: Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)

GO category Gene group C. masuca-specific C. sinica-specific shared
BP SP 20 20 30
IP 8 13 7
R 12 11 20
ID 9 7 9
SD 7 9 11
MF SP 12 18 32
IP 3 6 13
R 1 4 5
ID 5 4 3
SD 3 4 5
CC SP 9 10 13
IP 1 7 3
R 1 2 2
ID 3 1 2
SD 3 0 2
  1. Abbreviations: BP biological process, MF molecular function, CC cellular component. gene classes, SP strong purifying selection (Ks ≤ 0.5), IP intermediate purifying selection (0.5 < Ks ≤ 0.9), R relaxed or nearly relaxed selection (0.9 < Ks ≤ 1.1), ID intermediate Darwinian selection (1.1 < Ks ≤ 1.5), SD, strong Darwinian selection (Ks > 1.5). GO enrichment results were obtained using the R package topGO