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Table 3 RNA-Seq data

From: Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Gene tag

Gene

Gene product

3 hours incubation

6 hours incubation

Small intestine

Rectum

Small intestine

Rectum

Rumen

Log2FC

q-value

Log2FC

q-value

Log2FC

q-value

Log2FC

q-value

Log2FC

q-value

Z2315

acpD

FMN-dependent NADH-azoreductase

2.53

7.91E-05

5.12

7.34E-17

3.16

6.19E-07

4.77

7.25E-15

2.38

2.65E-04

Z4492

agaB

PTS system galactosamine-specific IIB component

NDE

 

3.01

2.87E-05

NDE

 

3.27

2.44E-06

NDE

 

Z4493

agaC

PTS system galactosamine-specific IIC component

NDE

 

2.11

4.41E-03

NDE

 

2.15

1.61E-03

NDE

 

Z4487

agaE

PTS system N-acetylgalactosamine-specific IID component

NDE

 

3.97

1.62E-10

2.60

4.74E-05

3.99

6.14E-11

2.44

1.35E-04

Z4488

agaF

PTS system N-acetylgalactosamine-specific IIA component

NDE

 

3.23

1.41E-08

NDE

 

3.20

7.02E-09

NDE

 

Z4485

agaV

PTS system N-acetylgalactosamine-specific IIB component

NDE

 

6.10

6.41E-23

3.22

5.89E-07

4.79

1.45E-14

2.52

1.40E-04

Z4486

agaW

PTS system N-acetylgalactosamine-specific IIC component

NDE

 

5.36

7.49E-22

3.37

5.24E-09

5.06

1.66E-19

3.07

1.25E-07

Z4491

agaY

Tagatose 1,6-diphosphate aldolase (GatY/KbaY subunit)

NDE

 

4.57

1.82E-13

2.54

7.96E-05

3.85

4.58E-10

2.69

2.25E-05

Z4484

agaZ

Tagatose 1,6-diphosphate aldolase (GatZ/KbaZ subunit)

NDE

 

5.81

2.92E-18

2.54

4.57E-04

4.24

5.68E-10

2.30

1.52E-03

Z1396

appB

Cytochrome bd oxidase subunit II

NDE

 

NDE

 

3.90

6.57E-08

NDE

 

3.18

1.60E-05

Z1395

appC

Cytochrome bd ubiquinol oxidase subunit I

NDE

 

NDE

 

4.33

7.02E-09

NDE

 

3.60

2.31E-06

Z0070

araA

L-arabinose isomerase

2.79

2.22E-03

NDE

 

3.14

6.37E-04

2.22

1.88E-02

NDE

 

Z0072

araB

L-ribulokinase

3.80

7.49E-05

3.49

4.33E-04

3.65

1.74E-04

3.82

7.55E-05

NDE

 

Z0069

araD

L-ribulose 5-phosphate 4-epimerase

2.81

1.03E-03

NDE

 

2.26

1.19E-02

NDE

 

NDE

 

Z2954

araF

L-arabinose transport system (substrate-binding protein)

4.06

1.61E-05

2.69

8.44E-03

4.56

1.30E-06

4.13

1.41E-05

NDE

 

Z2953

araG

L-arabinose transport system (ATP-binding protein)

2.57

6.40E-03

NDE

 

3.08

1.08E-03

2.09

3.18E-02

NDE

 

Z5245

asnA

Aspartate ammonia-ligase

NDE

 

2.68

9.66E-04

3.11

8.23E-05

2.84

3.50E-04

3.05

1.14E-04

Z0821

asnB

Asparagine synthase

NDE

 

2.84

2.54E-04

NDE

 

NDE

 

NDE

 

Z5744

aspA

Aspartate ammonia-lyase

6.08

3.44E-23

5.03

8.65E-16

5.34

5.67E-18

2.84

1.33E-05

4.46

1.04E-12

Z5734

cadA

Lysine decarboxylase

NDE

 

NDE

 

2.81

1.61E-03

NDE

 

3.33

1.21E-04

Z5735

cadB

Cadaverine:lysine antiporter

NDE

 

NDE

 

3.96

2.74E-05

NDE

 

4.15

9.05E-06

Z3712

cchB

Ethanolamine utilization protein EutN

NDE

 

NDE

 

4.3

4.58E-04

NDE

 

4.47

2.33E-04

Z0762

citC

[citrate (pro-3S)-lyase] ligase

NDE

 

NDE

 

NDE

 

NDE

 

2.02

8.56E-03

Z4278

cmtB

Mannitol-specific IIA component

2.35

4.79E-03

3.04

2.28E-04

2.10

1.38E-02

3.02

1.74E-04

2.04

1.38E-02

Z0901

cydB

Cytochrome bd ubiquinol oxydase (subunit II)

2.12

1.29E-04

2.37

2.32E-05

NDE

 

NDE

 

NDE

 

Z4942

dctA

Aerobic C4-dicarboxylates transporter

4.13

1.21E-09

3.91

1.73E-08

3.35

1.60E-06

3.65

1.29E-07

2.11

3.99E-03

Z5743

dcuA

Anaerobic C4-dicarboxylates transporter

3.21

2.46E-08

2.51

2.73E-05

2.12

5.02E-04

NDE

 

NDE

 

Z5725

dcuB

Anaerobic C4-dicarboxylates transporter

2.98

2.64E-05

3.49

8.54E-07

3.26

4.39E-06

NDE

 

2.11

4.48E-03

Z1240

dmsA

Dimethyl sulfoxide reductase subunit A

3.01

3.54E-07

NDE

 

3.47

3.43E-09

NDE

 

3.07

2.25E-07

Z1241

dmsB

Dimethyl sulfoxide reductase subunit B

3.48

6.54E-08

NDE

 

3.56

3.63E-08

NDE

 

2.97

6.04E-06

Z1242

dmsC

Dimethyl sulfoxide reductase subunit C

2.56

3.33E-05

NDE

 

2.59

3.36E-05

NDE

 

2.29

2.76E-04

Z3707

eutA

Ethanolamine utilization protein EutA

NDE

 

NDE

 

3.52

2.76E-03

2.75

2.10E-02

4.04

4.15E-04

Z3706

eutB

Ethanolamine ammonia-lyase (large subunit)

NDE

 

NDE

 

3.68

1.68E-03

3.12

8.17E-03

4.02

4.60E-04

Z3705

eutC

Ethanolamine ammonia-lyase (small subunit)

NDE

 

NDE

 

3.37

4.18E-03

2.79

1.85E-02

3.62

1.71E-03

Z3711

eutE

Aldehyde dehydrogenase

NDE

 

NDE

 

4.14

7.46E-04

NDE

 

4.50

2.01E-04

Z3709

eutG

Alcohol dehydrogenase

NDE

 

NDE

 

3.87

1.59E-03

NDE

 

4.42

2.15E-04

Z3708

eutH

Ethanolamine transporter

NDE

 

NDE

 

3.42

3.79E-03

NDE

 

4.10

3.45E-04

Z3714

eutI

Phosphotransacetylase

NDE

 

NDE

 

4.19

4.95E-04

NDE

 

4.51

1.43E-04

Z3710

eutJ

Ethanolamine utilization protein EutJ

NDE

 

NDE

 

3.64

3.76E-03

NDE

 

4.25

4.99E-04

Z3703

eutK

Ethanolamine utilization protein EutK

NDE

 

NDE

 

3.22

6.41E-03

3.01

1.02E-02

3.52

2.29E-03

Z3704

eutL

Ethanolamine utilization protein EutL

NDE

 

NDE

 

3.28

5.36E-03

2.82

1.70E-02

3.51

2.40E-03

Z3713

eutM

Ethanolamine utilization protein EutM

NDE

 

NDE

 

4.37

2.51E-04

NDE

 

4.64

8.61E-05

Z3717

eutP

Ethanolamine utilization protein EutP

NDE

 

NDE

 

3.80

1.76E-03

2.69

3.04E-02

4.33

2.60E-04

Z3716

eutQ

Ethanolamine utilization protein EutQ

NDE

 

NDE

 

3.87

1.56E-03

NDE

 

4.25

3.92E-04

Z3718

eutS

Ethanolamine utilization protein EutS

NDE

 

NDE

 

3.63

2.93E-03

3.27

7.36E-03

4.54

1.17E-04

Z2236

fdnG

Formate dehydrogenase-N (α subunit)

NDE

 

NDE

 

2.73

6.18E-06

3.48

3.63E-09

2.06

9.55E-04

Z2235

fdnH

Formate dehydrogenase-N (β subunit)

3.63

5.60E-08

NDE

 

NDE

 

NDE

 

NDE

 

Z2234

fdnI

Formate dehydrogenase-N (Îł subunit)

3.02

2.25E-09

NDE

 

NDE

 

NDE

 

NDE

 

Z5435

fdoH

Formate dehydrogenase-I (iron-sulfur subunit)

NDE

 

NDE

 

3.2

2.40E-06

3.92

3.75E-09

2.51

3.15E-04

Z5434

fdoI

Formate dehydrogenase-I (Îł subunit)

NDE

 

NDE

 

2.84

2.29E-05

3.53

6.94E-08

2.11

2.25E-03

Z5762

frdA

Fumarate reductase (flavoprotein subunit)

4.43

1.26E-12

2.24

9.63E-04

4.70

4.78E-14

2.02

3.04E-03

4.03

1.64E-10

Z5760

frdB

Fumarate reductase (iron-sulfur subunit)

4.90

4.39E-12

2.28

3.74E-03

4.88

6.63E-12

NDE

 

4.17

7.12E-09

Z5759

frdC

Fumarate reductase (C subunit)

4.92

3.51E-11

2.27

6.14E-03

4.57

1.13E-09

NDE

 

3.83

5.31E-07

Z5758

frdD

Fumarate reductase (D subunit)

4.85

1.93E-10

2.51

2.61E-03

4.04

1.93E-07

NDE

 

3.20

5.72E-05

Z3425

fruA

PTS system fructose-specific IIB component

2.95

3.71E-04

2.44

5.39E-03

NDE

 

NDE

 

NDE

 

Z3427

fruB

PTS system fructose-specific IIA component

3.24

4.31E-04

2.67

6.21E-03

2.59

7.71E-03

NDE

 

NDE

 

Z3426

fruK

1-phosphofructokinase

3.38

1.07E-04

2.76

2.79E-03

2.12

2.73E-02

NDE

 

NDE

 

Z4117

fucA

L-fuculose-phosphate aldolase

3.99

4.76E-07

4.06

4.41E-07

3.45

1.86E-05

4.24

7.00E-08

2.69

1.14E-03

Z4119

fucI

L-fucose/D-arabinose isomerase

4.12

5.83E-08

4.47

5.45E-09

2.87

3.07E-04

5.40

4.28E-13

NDE

 

Z4120

fucK

L-fuculokinase

2.50

3.90E-04

2.37

1.16E-03

NDE

 

3.34

1.32E-06

NDE

 

Z4116

fucO

Lactaldehyde reductase

3.22

1.17E-08

3.36

6.44E-06

3.39

4.25E-06

3.92

6.72E-08

2.91

9.95E-05

Z4118

fucP

L-fucose permease

3.62

5.13E-07

4.44

7.68E-10

2.62

5.68E-04

5.13

3.02E-13

NDE

 

Z4121

fucU

L-fucose mutarotase

NDE

 

NDE

 

NDE

 

2.05

1.07E-03

NDE

 

Z2615

fumA

Fumarase

3.90

5.07E-19

3.35

7.45E-14

3.50

2.06E-15

3.53

1.57E-15

2.50

3.54E-08

Z5724

fumB

Fumarate hydratase class I

3.57

1.16E-05

3.72

6.56E-06

3.76

4.38E-06

NDE

 

2.68

1.56E-03

Z2614

fumC

Fumarate hydratase class II

2.99

4.63E-10

2.19

1.31E-05

2.46

4.60E-07

NDE

 

NDE

 

Z0462

fusK

Fucose sensing two-component system (sensor)

NDE

 

3.12

3.86E-17

NDE

 

2.45

5.35E-11

NDE

 

Z0463

fusR

Fucose sensing two-component system (regulator)

3.37

2.15E-09

3.81

1.78E-11

NDE

 

3.58

2.40E-10

NDE

 

Z0927

galK

Galactokinase

2.55

1.80E-05

3.50

2.71E-09

NDE

 

NDE

 

NDE

 

Z0926

galM

Aldolase-1-epimerase

2.04

6.59E-04

2.62

1.02E-05

NDE

 

NDE

 

NDE

 

Z4288

galP

MFS transporter galactose:H+ symporter

3.23

1.20E-04

4.66

1.82E-08

NDE

 

2.75

1.54E-03

NDE

 

Z0928

galT

Galactose-1-phosphate uridylyltransferase

3.24

7.98E-07

4.58

1.59E-12

NDE

 

2.92

1.32E-05

NDE

 

Z3499

glpA

Glycerol 3-phosphate dehydrogenase (a subunit)

4.13

3.90E-06

2.50

1.07E-02

5.21

4.03E-09

3.42

2.20E-04

4.15

4.64E-06

Z3500

glpB

Glycerol 3-phosphate dehydrogenase (b subunit)

4.33

4.60E-06

NDE

 

5.01

1.05E-07

2.20

3.19E-02

3.77

1.06E-04

Z3501

glpC

Glycerol 3-phosphate dehydrogenase (c subunit)

3.91

2.15E-05

NDE

 

3.84

4.04E-05

NDE

 

2.51

1.03E-02

Z4786

glpD

Glycerol 3-phosphate dehydrogenase

3.62

8.99E-05

2.65

7.55E-03

4.98

4.13E-08

4.75

1.79E-07

4.23

4.61E-06

Z5472

glpF

Glycerol uptake facilitator protein

4.02

3.20E-09

3.66

1.38E-07

4.02

4.65E-09

5.33

2.65E-15

2.63

2.44E-04

Z5471

glpK

Glycerol kinase

3.80

3.61E-06

2.89

8.21E-04

3.87

3.11E-06

4.33

1.20E-07

2.38

6.39E-03

Z3498

glpT

Glycerol 3-phosphate transporter

5.65

1.72E-09

3.47

5.41E-04

5.44

8.86E-09

3.71

1.57E-04

4.05

3.23E-05

Z4805

gntK

Gluconokinase

NDE

 

2.44

3.04E-04

NDE

 

NDE

 

NDE

 

Z5919

gntP

High-affinity gluconate transporter

5.85

5.74E-16

3.17

4.16E-05

NDE

 

NDE

 

NDE

 

Z4770

gntT

Gnt-I system high-affinity gluconate transporter

NDE

 

2.52

1.95E-07

NDE

 

NDE

 

NDE

 

Z4804

gntU

Gnt-I system low-affinity gluconate transporter

NDE

 

2.35

1.99E-03

NDE

 

NDE

 

NDE

 

Z1076

grxA

Glutaredoxin 1

2.97

1.14E-06

5.31

2.61E-19

3.99

2.46E-11

4.51

3.83E-14

4.00

2.26E-11

Z4879

hpR

Phosphocarrier protein

NDE

 

NDE

 

2.56

5.73E-04

2.14

7.02E-03

2.32

1.63E-03

Z1389

hyaA

Hydrogenase I (small subunit)

2.62

3.08E-03

2.51

6.62E-03

6.24

3.71E-14

2.38

8.91E-03

5.66

9.23E-12

Z1390

hyaB

Hydrogenase I (large subunit)

2.58

3.41E-03

2.48

6.98E-03

6.32

1.14E-14

2.72

2.20E-03

5.69

5.17E-12

Z1391

hyaC

Hydrogenase I (B-type cytochrome subunit)

2.31

9.30E-03

2.39

9.57E-03

5.77

1.92E-12

2.45

6.16E-03

5.05

1.15E-09

Z1392

hyaD

Hydrogenase I (maturation protease)

2.22

1.16E-03

2.42

7.60E-03

5.47

1.45E-11

2.29

9.99E-03

4.81

4.38E-09

Z4350

hybA

Hydrogenase-2 (small subunit)

4.01

6.41E-09

2.92

5.37E-05

2.77

1.24E-04

NDE

 

2.27

2.01E-03

Z4349

hybB

Ni/Fe component of hydrogenase-2

4.24

1.21E-09

3.13

1.59E-05

2.86

8.54E-05

NDE

 

2.27

2.36E-03

Z4348

hybC

Hydrogenase-2 (large subunit)

3.83

3.42E-08

2.8

1.09E-04

2.65

2.71E-04

NDE

 

2.00

7.53E-03

Z4347

hybD

Hydrogenase maturation protease

3.39

1.11E-06

2.33

1.68E-03

2.22

2.74E-03

NDE

 

NDE

 

Z5632

malE

Maltose/maltodextrin transport system (substrate-binding protein)

NDE

 

3.22

4.60E-05

NDE

 

2.41

3.70E-03

NDE

 

Z5631

malF

Maltose/maltodextrin transport system (permease protein)

NDE

 

2.71

9.82E-06

NDE

 

NDE

 

NDE

 

Z5630

malG

Maltose/maltodextrin transport system (permease protein)

NDE

 

2.79

3.81E-05

NDE

 

NDE

 

NDE

 

Z5633

malK

Multiple sugar transport system (ATP-binding protein)

NDE

 

3.99

7.37E-08

NDE

 

2.36

3.38E-03

NDE

 

Z2860

manX

PTS system mannose-specific IIAB component

NDE

 

2.69

4.64E-08

NDE

 

NDE

 

NDE

 

Z2861

manY

PTS system mannose-specific IIC component

NDE

 

2.81

5.05E-09

NDE

 

NDE

 

NDE

 

Z2862

manZ

PTS system mannose-specific IID component

NDE

 

2.66

1.49E-07

NDE

 

NDE

 

NDE

 

Z3404

mglA

Methyl-galactoside transport system (ATP-binding protein)

2.98

5.30E-04

4.04

1.89E-06

2.84

1.28E-03

3.38

8.10E-05

NDE

 

Z3405

mglB

Methyl-galactoside transport system (substrate-binding protein)

3.75

1.06E-06

4.77

4.85E-10

2.76

6.21E-04

4.09

1.00E-07

NDE

 

Z3403

mglC

Methyl-galactoside transport system (permease protein)

3.02

4.18E-05

3.33

7.49E-06

3.06

4.16E-05

2.85

1.52E-04

NDE

 

Z0824

nagA

N-acetylglucosamine 6-phosphate deacetylase

2.37

7.39E-06

2.95

2.19E-08

NDE

 

NDE

 

NDE

 

Z0825

nagB

Glucosamine 6-phosphate deaminase

3.44

1.74E-07

4.49

7.20E-12

NDE

 

NDE

 

NDE

 

Z0826

nagE

PTS system N-acetylglucosamine-specific IIABC component

3.31

4.52E-08

4.11

9.49E-12

NDE

 

2.25

3.91E-04

NDE

 

Z4583

nanA

N-acetylneuraminate lyase

7.79

1.62E-18

5.14

2.72E-08

3.55

2.07E-04

5.90

8.61E-11

NDE

 

Z4582

nanT

Sialic acid transporter

6.32

1.03E-13

3.85

1.80E-05

2.30

1.71E-02

5.18

2.28E-09

NDE

 

Z3463

napA

Nitrate reductase (catalytic subunit)

2.78

2.25E-07

NDE

 

2.66

1.03E-06

NDE

 

2.77

3.14E-07

Z3460

napB

Cytochrome v-type protein NapB

NDE

 

NDE

 

2.35

4.67E-03

2.24

7.15E-03

NDE

 

Z3461

napH

Ferredoxin-type protein NapH

NDE

 

NDE

 

2.33

3.08E-03

NDE

 

2.15

6.29E-03

Z2001

narG

Nitrate reductase (α subunit)

NDE

 

NDE

 

4.50

1.93E-23

NDE

 

4.97

1.46E-28

Z2002

narH

Nitrate reductase (β subunit)

NDE

 

NDE

 

2.97

2.34E-15

NDE

 

3.36

1.58E-19

Z2004

narI

Nitrate reductase (Îł subunit)

NDE

 

NDE

 

2.95

8.43E-11

NDE

 

3.30

2.02E-13

Z2003

narJ

Nitrate reductase molybdenum cofactor

NDE

 

NDE

 

3.23

3.23E-11

NDE

 

3.67

2.51E-14

Z4726

nirB

Nitrite reductase (large subunit)

NDE

 

NDE

 

NDE

 

NDE

 

2.06

9.01E-07

Z5671

nrfC

Nitrite reductase (formate-dependent)

NDE

 

NDE

 

5.35

1.49E-13

2.63

8.52E-04

5.20

7.59E-13

Z5673

nrfE

Cytochrome c-type biogenesis protein NrfE

NDE

 

NDE

 

3.43

2.08E-06

NDE

 

3.35

3.59E-06

Z5674

nrfF

Formate-dependent nitrite reductase complex subunit NrfF

NDE

 

NDE

 

3.02

1.58E-04

NDE

 

3.06

1.23E-04

Z5675

nrfG

Formate-dependent nitrite reductase complex subunit NrfG

NDE

 

NDE

 

2.68

4.04E-05

NDE

 

2.78

1.73E-05

Z3541

nuoH

NADH-quinone oxidoreductase subunit H

NDE

 

NDE

 

NDE

 

2.45

5.24E-04

NDE

 

Z3540

nuoI

NADH-quinone oxidoreductase subunit I

NDE

 

NDE

 

2.04

5.31E-03

2.72

9.55E-05

NDE

 

Z3539

nuoJ

NADH-quinone oxidoreductase subunit J

NDE

 

NDE

 

2.02

5.51E-03

2.82

1.86E-05

NDE

 

Z3538

nuoK

NADH-quinone oxidoreductase subunit K

NDE

 

NDE

 

NDE

 

2.89

4.64E-06

NDE

 

Z3537

nuoL

NADH-quinone oxidoreductase subunit L

NDE

 

NDE

 

NDE

 

2.76

1.98E-05

NDE

 

Z3536

nuoM

NADH-quinone oxidoreductase subunit M

NDE

 

NDE

 

NDE

 

3.04

1.26E-06

NDE

 

Z4758

pckA

Phosphoenolpyruvate carboxykinase

3.54

2.78E-10

2.60

8.68E-06

2.86

6.67E-07

3.44

1.30E-09

NDE

 

Z3401

preT

Dihydropyrimidine dehydrogenase

2.94

2.12E-06

2.48

1.19E-04

6.46

4.01E-28

2.32

3.81E-04

5.40

9.99E-20

Z3980

proW

Glycine betaine/proline transport system

2.36

8.30E-03

NDE

 

NDE

 

-2.58

4.47E-03

NDE

 

Z3981

proX

Glycine betaine/proline transport system

2.74

6.12E-04

NDE

 

NDE

 

-2.1

1.24E-02

NDE

 

Z3653

ptsN

PTS system fructose-specific IIB-like component

NDE

 

NDE

 

NDE

 

NDE

 

2.55

4.69E-03

Z5250

rbsA

Ribose transport system ATP-binding protein

6.24

4.46E-23

5.83

7.52E-20

2.84

2.63E-05

5.80

9.53E-20

4.60

9.20E-13

Z5252

rbsB

Ribose transport system substrate-binding protein

4.23

1.81E-08

2.16

9.34E-03

NDE

 

2.59

1.10E-03

NDE

 

Z5251

rbsC

Ribose transport system permease protein

6.49

5.50E-29

5.18

2.95E-18

4.04

1.99E-11

6.28

1.33E-26

5.00

3.27E-17

Z5249

rbsD

D-ribose pyranase

6.17

2.40E-23

5.28

5.82E-17

3.40

1.91E-07

6.10

2.29E-22

4.81

3.25E-14

Z5253

rbsK

Ribokinase

3.82

6.03E-12

2.13

3.67E-04

NDE

 

2.81

9.77E-07

NDE

 

Z2857

sdaA

L-serine dehydratase

2.18

2.59E-15

NDE

 

2.46

3.92E-19

2.47

4.52E-19

2.25

3.44E-16

Z4114

sdaB

L-serine dehydratase (deaminase)

4.36

2.42E-18

2.93

1.87E-08

NDE

 

NDE

 

NDE

 

Z4113

sdaC

Serine transporter

4.59

1.85E-30

3.72

8.52E-20

NDE

 

2.39

1.43E-08

NDE

 

Z0877

sdhA

Succinate dehydrogenase (flavoprotein subunit)

NDE

 

NDE

 

NDE

 

2.12

5.16E-03

NDE

 

Z0878

sdhB

Succinate dehydrogenase (iron-sulfur subunit)

NDE

 

NDE

 

NDE

 

2.10

1.39E-02

NDE

 

Z0876

sdhD

Succinate dehydrogenase (membrane anchor subunit)

NDE

 

NDE

 

NDE

 

2.04

2.05E-03

NDE

 

Z0880

sucA

2-oxoglutarate dehydrogenase E1 component

NDE

 

NDE

 

NDE

 

2.60

6.80E-04

NDE

 

Z0881

sucB

2-oxoglutarate dehydrogenase E2 component

NDE

 

NDE

 

NDE

 

2.91

3.11E-04

NDE

 

Z0882

sucC

Succinyl-CoA synthetase (β subunit)

NDE

 

NDE

 

NDE

 

2.93

2.18E-04

NDE

 

Z0883

sucD

Succinyl-CoA synthetase (α subunit)

NDE

 

NDE

 

NDE

 

2.89

1.78E-04

NDE

 

Z5501

talC

Fructose 6-phosphate aldolase 2

2.45

3.24E-05

NDE

 

2.61

1.21E-05

NDE

 

2.16

3.41E-04

Z4469

tdcB

Threonine dehydratase

6.04

1.04E-09

NDE

 

6.43

7.98E-11

NDE

 

4.56

8.29E-06

Z4468

tdcC

Threonine/serine transporter

4.99

3.98E-07

NDE

 

5.02

3.93E-07

NDE

 

3.14

2.54E-03

Z4467

tdcD

Propionate kinase

5.22

2.18E-07

NDE

 

5.89

4.20E-09

2.29

3.87E-02

4.22

4.89E-05

Z4466

tdcE

Formate C-acetyltransferase

4.54

3.69E-05

NDE

 

5.05

4.69E-06

2.43

4.10E-02

3.79

8.59E-04

Z5203

tnaA

Tryptophanase

3.16

6.15E-03

NDE

 

4.73

2.43E-05

2.48

3.88E-02

3.62

1.69E-03

Z5204

tnaB

Low affinity tryptophan permease

NDE

 

NDE

 

3.28

2.20E-05

NDE

 

NDE

 

Z4444

uxaA

Altronate hydrolase

5.41

1.05E-13

3.97

1.52E-07

NDE

 

NDE

 

NDE

 

Z2184

uxaB

Tagaturonate reductase

4.08

9.81E-13

2.19

3.95E-04

NDE

 

NDE

 

NDE

 

Z4445

uxaC

Glucuronate isomerase

6.19

2.40E-19

4.89

4.88E-12

NDE

 

NDE

 

NDE

 

Z5920

uxuA

Mannonate hydrolase

7.50

3.08E-25

5.27

1.83E-12

2.86

2.82E-04

2.46

1.98E-03

NDE

 

Z5921

uxuB

Mannonate oxidoreductase

6.68

2.40E-22

4.21

4.35E-09

2.41

1.52E-03

NDE

 

NDE

 

Z4990

xylA

Xylose isomerase

NDE

 

3.45

4.67E-07

3.22

2.57E-06

4.60

3.99E-12

2.04

4.53E-03

Z4989

xylB

Xylulokinase

NDE

 

2.02

5.33E-03

NDE

 

2.85

2.43E-05

NDE

 

Z4991

xylF

D-xylose transport system (substrate-binding protein)

NDE

 

4.83

3.40E-09

3.48

2.93E-05

5.77

3.03E-13

2.54

3.06E-03

Z4992

xylG

D-xylose transport system (ATP-binding protein)

NDE

 

NDE

 

NDE

 

2.08

4.14E-03

NDE

 

Z4993

xylH

D-xylose transport system (permease protein)

NDE

 

NDE

 

2.03

1.36E-03

2.07

1.01E-03

NDE

 

Z5717

yjdE

Arginine:agmatine antiporter

2.43

8.29E-03

NDE

 

3.76

1.94E-05

NDE

 

3.19

3.64E-04

Z0461

z0461

Fucose transporter (optimal import)

2.66

1.23E-03

3.00

3.12E-04

2.33

6.92E-03

4.75

1.65E-09

NDE

3.61E-04

Z1245

z1245

Putative transporter

NDE

 

NDE

 

2.02

1.93E-03

NDE

 

2.93

9.54E-05

Z2575

z2575

Tat-targeted selenite reductase subunit YnfE

2.86

2.35E-05

NDE

 

2.97

1.35E-05

NDE

 

2.68

2.24E-04

Z2576

z2576

Tat-targeted selenite reductase subunit YnfF

2.55

1.58E-04

NDE

 

3.31

7.19E-07

NDE

1.65E-09

2.57

3.61E-04

Z2577

z2577

Tat-targeted selenite reductase subunit YnfG

2.75

2.04E-04

2.04

1.04E-02

3.44

3.00E-06

NDE

 

2.78

5.41E-04

Z3394

z3394

MFS transporter

NDE

 

2.75

9.22E-03

2.42

2.39E-02

4.54

 

3.92

4.73E-03

Z3715

z3715

Ethanolamine utilization cobalamin adenosyltransferase

NDE

 

NDE

 

3.94

1.25E-03

NDE

6.32E-05

4.28

4.33E-11

Z4207

z4207

Xanthine dehydrogenase iron-sulfur-binding subunit

NDE

 

NDE

 

2.86

2.14E-06

NDE

 

2.15

1.85E-04

Z4464

z4464

L-serine dehydratase

4.15

1.51E-04

NDE

 

4.25

1.30E-04

NDE

 

3.22

1.87E-06

Z4875

z4875

PTS system galactitol-specific IIA component

2.44

8.99E-06

NDE

 

3.84

2.25E-12

2.36

1.45E-05

3.61

3.91E-09

Z4876

z4876

PTS system galactitol-specific IIB component

2.98

2.87E-07

NDE

 

3.79

6.23E-11

2.68

 

3.43

 

Z4877

z4877

PTS system galactitol-specific IIC component

2.22

2.94E-05

NDE

 

2.37

6.12E-06

NDE

3.13E-06

NDE

7.53E-05

  1. NDE not differentially expressed