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Table 1 Average (and standard deviation) of raw reads, reads passing QC, reads aligned and concordant pair alignment rate in each RNA-Seq dataset

From: Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle

  Raw reads QC passed reads (paired) Aligned reads (paired) Concordant pair alignment rate (%)
RNA-Seq data Number of samples Average Standard deviation Average Standard deviation Average Standard deviation Average Standard deviation
Angus muscle 45 17,816,260 4,293,439 6,337,427 1,840,633 5,769,907 1,677,758 90.0% 1.4%
Angus liver 37 13,616,027 7,751,116 5,437,947 3,065,337 4,478,339 2,720,511 79.7% 8.4%
Holstein liver 20 35,145,555 7,060,354 14,869,140 3,328,298 13,794,312 2,960,745 91.8% 1.0%
Holstein WBC 20 40,462,263 6,419,677 16,355,951 2,808,778 14,786,745 2,465,978 89.4% 1.1%
  1. The average (and standard deviation) of raw reads, QC passed and aligned paired reads and concordant pair alignment rate (%) of the animals in each RNA-Seq dataset