Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Caballero-Solares, Albert; Xue, Xi; Parrish, Christopher C.; Foroutani, Maryam Beheshti; Taylor, Richard G.; Rise, Matthew L.

doi:10.1186/s12864-018-5188-6

Table 5 List of microarray features representing immune-related genes that were differentially expressed in the liver of Atlantic salmon fed diets with different proportions of marine and terrestrial ingredients

From: Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Probe ID^a	Best named BLASTx hit [species]^b	Functional annotation^c	ABP vs MAR^d	VEG vs MAR^d	VEG vs ABP^d
Antibacterial
C159R112	Leukocyte cell-derived chemotaxin 2 precursor ( lect2 ) [ S. salar ]	P: response to bacterium	−3.0	−1.8	1.7
C134R121	Leukocyte cell-derived chemotaxin 2 precursor ( lect2a ) [ S. salar ]	P: response to bacterium	−2.3	−1.9	1.2
C164R142	Leukocyte cell-derived chemotaxin 2 precursor ( lect2a ) [ S. salar ]	P: response to bacterium	−1.9	− 1.3	1.5
C198R010	Hepcidin-1 precursor [S. salar]	P: defense response to bacterium	−1.9	−1.5	1.3
C201R127	Predicted: liver-expressed antimicrobial peptide 2-like [S. salar]	P: defense response to bacterium	−1.4	−2.1	−1.5
C150R092	Immunoglobulin delta heavy chain constant region ( igd ) [ S. salar ]	P: defense response to bacterium	1.6	−1.2	−1.9
C061R085	Ig mu chain C region membrane-bound form ( igmb ) [ S. salar ]	P: antibacterial humoral response	1.2	−1.3	−1.6
C205R051	Ig mu chain C region membrane-bound form ( igma ) [ S. salar ]	P: antibacterial humoral response	1.2	−1.3	−1.5
C075R137	Ig mu chain C region membrane-bound form ( igm ) [ S. salar ]	P: antibacterial humoral response	1.2	−1.3	−1.5
Antiviral
C236R043	Interferon-induced GTP-binding protein Mx ( mxb ) [ S. salar ]	P: immune system process, P: response to virus	1.4	2.1	1.5
C055R128	Interferon-induced protein with tetratricopeptide repeats 5 ( ifit5 ) [ S. salar ]	P: immune system process, P: response to virus	−1.5	1.3	1.9
Other immune-related
C071R161	Predicted: alpha-1-acid glycoprotein 1-like [Poecilia latipinna]	P: regulation of immune system process	−2.2	−1.4	1.6
C097R069	MHC class I heavy chain ( mhcI ) [ Salmo trutta ]	P: antigen processing and presentation	1.1	1.8	1.7
C027R162	MHC class I heavy chain ( mhcI ) [ Salmo trutta ]	P: antigen processing and presentation	−1.3	−1.6	−1.3
C211R164	MHC class I ( mhcI ) [ S. salar ]	P: antigen processing and presentation	−1.1	1.7	1.9
C243R111	MHC class I heavy chain ( mhcI ) [ Salmo trutta ]	P: antigen processing and presentation	−1.3	1.5	1.9
C219R002	Predicted: glucosidase 2 subunit beta-like [S. salar]	P: innate immune response	−1.2	− 1.8	−1.5
C249R068	Immunoglobulin light chain precursor [S. salar]	P: innate immune response	−1.0	−1.8	− 1.7
C238R071	Predicted: C-C motif chemokine 13-like [S. salar]*	P: chemotaxis; P: Inflammatory response	1.0	1.8	1.8
C012R162	Predicted: dedicator of cytokinesis protein 11 isoform X2 [S. salar]	P: B cell homeostasis	1.9	1.8	−1.1
C121R056	Predicted: TSC22 domain family protein 3-like isoform X2 [S. salar]	P: negative regulation of activation-induced cell death of T cells	1.8	1.2	−1.4
C255R144	Ubiquitin [S. salar]	P: innate immune response	−1.4	1.4	1.8
C219R041	Predicted: peroxisomal membrane protein 2 [S. salar]	P: response to type I interferon	−1.4	1.3	1.8
C050R077	Predicted: probable E3 ubiquitin-protein ligase HERC6 [S. salar]	P: protein ubiquitination	−1.1	1.8	2.0

^a,b,c,dAll column constructions are as described in Table 3

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ISSN: 1471-2164

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