Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Caballero-Solares, Albert; Xue, Xi; Parrish, Christopher C.; Foroutani, Maryam Beheshti; Taylor, Richard G.; Rise, Matthew L.

doi:10.1186/s12864-018-5188-6

Table 6 List of microarray features representing genes involved in oxidation-reduction processes that were differentially expressed in the liver of Atlantic salmon fed diets with different proportions of marine and terrestrial ingredients

From: Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Probe ID^a	Best named BLASTx hit [species]^b	Functional annotation^c	ABP vs MAR^d	VEG vs MAR^d	VEG vs ABP^d
Oxidation-reduction process
C163R079	Predicted: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like [S. salar]	P:folic acid metabolic process; P:oxidation-reduction process	−1.6	1.2	2.0
C140R113	Predicted: bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like [S. salar]	P:folic acid-containing compound biosynthetic process; P:oxidation-reduction process	−1.6	1.2	1.9
C060R108	Cytochrome c oxidase subunit II ( mtco2 ) [ Oncorhynchus masou masou ]]	P:aerobic respiration	1.7	−1.0	−1.7
C188R069	Cytochrome oxidase subunit I ( mtco1 ) [ Oncorhynchus masou masou ]	P:aerobic respiration	1.3	−1.4	−1.7
C110R041	Predicted: glycine dehydrogenase (decarboxylating), mitochondrial-like [S. salar]	P:glycine catabolic process; P:oxidation-reduction process	2.0	1.4	−1.4
C177R075	Predicted: 4-hydroxyphenylpyruvate dioxygenase-like protein [S. salar]	P:tyrosine catabolic process; P:oxidation-reduction process	1.8	1.5	−1.2
C033R147	Predicted: 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial-like [S. salar]	P:vitamin D catabolic process; P:oxidation-reduction process	1.9	1.8	−1.0
C202R025	Predicted: glutathione S-transferase theta-2B [S. salar]	P:glutathione metabolic process; P:oxidation-reduction process	−1.9	−1.2	1.6
C223R087	Predicted: cytochrome c oxidase subunit 7A-related protein, mitochondrial [S. salar]	P:oxidation-reduction process	−1.5	−1.9	− 1.3
C079R035	Predicted: saccharopine dehydrogenase-like oxidoreductase [S. salar]	P:platelet degranulation P:oxidation-reduction process	−1.1	−1.6	− 1.5
C161R028	Cytochrome P450 1A1 [S. salar]	P:steroid metabolic process; P:oxidation-reduction process	−1.6	−1.9	− 1.2
C013R125	Predicted: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like isoform X2 [S. salar]	P:response to oxidative stress; P:oxidation-reduction process	1.2	−1.6	−1.8

^a,b,c,dAll column constructions are as described in Table 3

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ISSN: 1471-2164

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