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Table 1 Distribution of sequenced reads from raw data to cleaned sequences

From: Identification and characterization of skin color microRNAs in Koi carp (Cyprinus carpio L.) by Illumina sequencing

Type Black skin Red skin White skin
Total reads % Total reads % Total reads %
Raw reads 20,502,959 100 16,916,198 100 19,839,224 100
tRNA 173,761 0.88 247,404 1.53 221,565 1.17
snoRNA 4455 0.023 4818 0.029 5169 0.027
snRNA 3143 0.016 4346 0.027 4199 0.022
rRNA 175,928 0.90 150,346 0.93 180,280 0.95
scRNA 6980 0.036 7887 0.048 7890 0.042
Intro_antisense 503,101 2.56 437,439 2.70 558,702 2.94
Exon_antisense 197,485 1.01 186,048 1.14 168,655 0.889
Other 18,584,128 94.58 15,155,625 93.59 17,835,047 93.96