TY - JOUR AU - Richter, K. AU - Haslbeck, M. AU - Buchner, J. PY - 2010 DA - 2010// TI - The heat shock response: life on the verge of death, JO - Molecular cell VL - 40 UR - https://doi.org/10.1016/j.molcel.2010.10.006 DO - 10.1016/j.molcel.2010.10.006 ID - Richter2010 ER - TY - JOUR AU - Al-Whaibi, M. H. PY - 2010 DA - 2010// TI - Plant heat-shock proteins: a mini review JO - J King Saud Univ - Science VL - 23 UR - https://doi.org/10.1016/j.jksus.2010.06.022 DO - 10.1016/j.jksus.2010.06.022 ID - Al-Whaibi2010 ER - TY - JOUR AU - Waters, E. R. PY - 1995 DA - 1995// TI - The Molecular Evolution of the Small Heat-Shock Proteins in Plants JO - Genetics VL - 141 ID - Waters1995 ER - TY - JOUR AU - Scharf, K. D. AU - Siddique, M. AU - Vierling, E. PY - 2001 DA - 2001// TI - The expanding family of Arabidopsis thaliana small heat stress proteins and a new family of proteins containing alpha-crystallin domains (acd proteins) JO - Cell Stress Chaperones VL - 6 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Scharf2001 ER - TY - JOUR AU - Park, C. J. AU - Seo, Y. S. PY - 2015 DA - 2015// TI - Heat shock proteins: A review of the molecular chaperones for plant immunity JO - Plant Pathol J VL - 31 UR - https://doi.org/10.5423/PPJ.RW.08.2015.0150 DO - 10.5423/PPJ.RW.08.2015.0150 ID - Park2015 ER - TY - JOUR AU - Prasinos, C. AU - Krampis, K. AU - Samakovli, D. AU - Hatzopoulos, P. PY - 2005 DA - 2005// TI - Tight regulation of expression of two Arabidopsis cytosolic Hsp90 genes during embryo development, JO - J Exp Bot VL - 56 UR - https://doi.org/10.1093/jxb/eri035 DO - 10.1093/jxb/eri035 ID - Prasinos2005 ER - TY - JOUR AU - Faurobert, M. AU - Mihr, C. AU - Bertin, N. AU - Pawlowski, T. AU - Negroni, L. AU - Sommerer, N. AU - Causse, M. PY - 2007 DA - 2007// TI - Major proteome variations associated with cherry tomato pericarp development and ripening JO - Plant Physiol VL - 143 UR - https://doi.org/10.1104/pp.106.092817 DO - 10.1104/pp.106.092817 ID - Faurobert2007 ER - TY - JOUR AU - Li, L. AU - Wang, X. AU - Zhang, X. AU - Guo, M. AU - Liu, T. PY - 2017 DA - 2017// TI - Unraveling the target genes of rin transcription factor during tomato fruit ripening and softening JO - J Sci Food Agric VL - 97 UR - https://doi.org/10.1002/jsfa.7825 DO - 10.1002/jsfa.7825 ID - Li2017 ER - TY - JOUR AU - Low, D. AU - Brandle, K. AU - Nover, L. AU - Forreiter, C. PY - 2000 DA - 2000// TI - Cytosolic heat-stress proteins Hsp17.7 class I and Hsp17.3 class II of tomato act as molecular chaperones in vivo JO - Planta VL - 211 UR - https://doi.org/10.1007/s004250000315 DO - 10.1007/s004250000315 ID - Low2000 ER - TY - JOUR AU - Lawrence, S. AU - Cline, K. AU - Moore, G. PY - 1997 DA - 1997// TI - Chromoplast development in ripening tomato fruit: identification of cdnas for chromoplast-targeted proteins and characterization of a cdna encoding a plastid-localized low-molecular-weight heat shock protein JO - Plant Mol Biol VL - 33 UR - https://doi.org/10.1023/A:1005785321165 DO - 10.1023/A:1005785321165 ID - Lawrence1997 ER - TY - JOUR AU - Neta-Sharir, I. AU - Isaacson, T. AU - Lurie, S. AU - Weiss, D. PY - 2005 DA - 2005// TI - Dual role for tomato heat shock protein 21: Protecting photosystem ii from oxidative stress and promoting color changes during fruit maturation JO - Plant Cell VL - 17 UR - https://doi.org/10.1105/tpc.105.031914 DO - 10.1105/tpc.105.031914 ID - Neta-Sharir2005 ER - TY - JOUR AU - Rizzon, C. AU - Ponger, L. AU - Gaut, B. S. PY - 2006 DA - 2006// TI - Striking similarities in the genomic distribution of tandemly arrayed genes in arabidopsis and rice JO - PLoS Comput Biol VL - 2 UR - https://doi.org/10.1371/journal.pcbi.0020115 DO - 10.1371/journal.pcbi.0020115 ID - Rizzon2006 ER - TY - JOUR AU - Hanada, K. AU - Zou, C. AU - Lehti-Shiu, M. D. AU - Shinozaki, K. AU - Shiu, S. H. PY - 2008 DA - 2008// TI - Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli JO - Plant Physiol VL - 148 UR - https://doi.org/10.1104/pp.108.122457 DO - 10.1104/pp.108.122457 ID - Hanada2008 ER - TY - JOUR AU - Krsticevic, F. J. AU - Arce, D. P. AU - Ezpeleta, J. AU - Tapia, E. PY - 2016 DA - 2016// TI - Tandem Duplication Events in the Expansion of the Small Heat Shock Protein Gene Family in Solanum lycopersicum (cv. Heinz 1706) JO - G3 (Bethesda) VL - 6 ID - Krsticevic2016 ER - TY - JOUR AU - Yu, J. AU - Cheng, Y. AU - Feng, K. AU - Ruan, M. AU - Ye, Q. AU - Wang, R. AU - Li, Z. AU - Zhou, G. AU - Yao, Z. AU - Yang, Y. AU - Wan, H. PY - 2016 DA - 2016// TI - Genome-wide identification and expression profiling of tomato hsp20 gene family in response to biotic and abiotic stresses JO - Front Plant Sci VL - 7 ID - Yu2016 ER - TY - JOUR AU - Ouyang, Y. AU - Chen, J. AU - Xie, W. AU - Wang, L. AU - Zhang, Q. PY - 2009 DA - 2009// TI - Comprehensive sequence and expression profile analysis of hsp20 gene family in rice JO - Plant Mol Biol VL - 70 UR - https://doi.org/10.1007/s11103-009-9477-y DO - 10.1007/s11103-009-9477-y ID - Ouyang2009 ER - TY - JOUR AU - Sarkar, N. K. AU - Kim, Y. -. K. AU - Grover, A. PY - 2009 DA - 2009// TI - Rice shsp genes: genomic organization and expression profiling under stress and development JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-393 DO - 10.1186/1471-2164-10-393 ID - Sarkar2009 ER - TY - JOUR AU - Guo, M. AU - Liu, J. H. AU - Lu, J. P. AU - Zhai, Y. F. AU - Wang, H. AU - Gong, Z. H. AU - Wang, S. B. AU - Lu, M. H. PY - 2015 DA - 2015// TI - Genome-wide analysis of the cahsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress JO - Front Plant Sci VL - 6 ID - Guo2015 ER - TY - JOUR AU - Giorno, F. AU - Wolters-Arts, M. AU - Grillo, S. AU - Scharf, K. D. AU - Vriezen, W. H. AU - Mariani, C. PY - 2010 DA - 2010// TI - Developmental and heat stress-regulated expression of hsfa2 and small heat shock proteins in tomato anthers JO - J Exp Bot VL - 61 UR - https://doi.org/10.1093/jxb/erp316 DO - 10.1093/jxb/erp316 ID - Giorno2010 ER - TY - JOUR AU - Kotak, S. AU - Larkindale, J. AU - Lee, U. AU - von Koskull-Döring, P. AU - Vierling, E. AU - Scharf, K. D. PY - 2007 DA - 2007// TI - Complexity of the heat stress response in plants JO - Curr Opin Plant Biol VL - 10 UR - https://doi.org/10.1016/j.pbi.2007.04.011 DO - 10.1016/j.pbi.2007.04.011 ID - Kotak2007 ER - TY - JOUR AU - Waters, E. R. PY - 2013 DA - 2013// TI - The evolution, function, structure, and expression of the plant shsps JO - J Exp Bot VL - 64 UR - https://doi.org/10.1093/jxb/ers355 DO - 10.1093/jxb/ers355 ID - Waters2013 ER - TY - JOUR AU - Amin, J. AU - Ananthan, J. AU - Voellmy, R. PY - 1988 DA - 1988// TI - Key features of heat shock regulatory elements JO - Mol Cell Biol VL - 8 UR - https://doi.org/10.1128/MCB.8.9.3761 DO - 10.1128/MCB.8.9.3761 ID - Amin1988 ER - TY - JOUR AU - Akerfelt, M. AU - Morimoto, R. I. AU - Sistonen, L. PY - 2010 DA - 2010// TI - Heat shock factors: integrators of cell stress, development and lifespan JO - Nat Rev Mol Cell Biol VL - 11 UR - https://doi.org/10.1038/nrm2938 DO - 10.1038/nrm2938 ID - Akerfelt2010 ER - TY - JOUR AU - Bonner, J. AU - Ballou, C. AU - Fackenthal, D. L. PY - 1994 DA - 1994// TI - Interactions between dna-bound trimers of the yeast heat shock factor JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.1.501 DO - 10.1128/MCB.14.1.501 ID - Bonner1994 ER - TY - JOUR AU - Medina-Rivera, A. AU - Abreu-Goodger, C. AU - Thomas-Chollier, M. AU - Salgado, H. AU - Collado-Vides, J. AU - van Helden, J. PY - 2011 DA - 2011// TI - Theoretical and empirical quality assessment of transcription factor-binding motifs JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq710 DO - 10.1093/nar/gkq710 ID - Medina-Rivera2011 ER - TY - JOUR AU - Leibovich, L. AU - Paz, I. AU - Yakhini, Z. AU - Mandel-Gutfreund, Y. PY - 2013 DA - 2013// TI - Drimust: a web server for discovering rank imbalanced motifs using suffix trees JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt407 DO - 10.1093/nar/gkt407 ID - Leibovich2013 ER - TY - JOUR AU - Fragkostefanakis, S. AU - Simm, S. AU - Paul, P. AU - Bublak, D. AU - Scharf, K. -. D. AU - Schleiff, E. PY - 2015 DA - 2015// TI - Chaperone network composition in Solanum lycopersicum explored by transcriptome profiling and microarray meta-analysis JO - Plant Cell Environ VL - 38 UR - https://doi.org/10.1111/pce.12426 DO - 10.1111/pce.12426 ID - Fragkostefanakis2015 ER - TY - JOUR AU - Luehr, S. AU - Hartmann, H. AU - Söding, J. PY - 2012 DA - 2012// TI - The xxmotif web server for exhaustive, weight matrix-based motif discovery in nucleotide sequences JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks602 DO - 10.1093/nar/gks602 ID - Luehr2012 ER - TY - JOUR AU - Goyal, R. K. AU - Kumar, V. AU - Shukla, V. AU - Mattoo, R. AU - Liu, Y. AU - Chung, S. AU - Giovannoni, J. J. AU - Mattoo, A. K. PY - 2012 DA - 2012// TI - Features of a unique intronless cluster of class i small heat shock protein genes in tandem with box c/d snorna genes on chromosome 6 in tomato (Solanum lycopersicum) JO - Planta VL - 235 UR - https://doi.org/10.1007/s00425-011-1518-5 DO - 10.1007/s00425-011-1518-5 ID - Goyal2012 ER - TY - JOUR AU - Suzuki, N. AU - Sejima, H. AU - Tam, R. AU - Schlauch, K. AU - Mittler, R. PY - 2011 DA - 2011// TI - Identification of the mbf1 heat-response regulon of arabidopsis thaliana JO - Plant J VL - 66 UR - https://doi.org/10.1111/j.1365-313X.2011.04550.x DO - 10.1111/j.1365-313X.2011.04550.x ID - Suzuki2011 ER - TY - JOUR AU - Medina-Rivera, A. AU - Defrance, M. AU - Sand, O. AU - Herrmann, C. AU - Castro-Mondragon, J. A. AU - Delerce, J. AU - Jaeger, S. AU - Blanchet, C. AU - Vincens, P. AU - Caron, C. AU - Staines, D. M. AU - Contreras-Moreira, B. AU - Artufel, M. AU - Charbonnier-Khamvongsa, L. AU - Hernandez, C. AU - Thieffry, D. AU - Thomas-Chollier, M. AU - van Helden, J. PY - 2015 DA - 2015// TI - RSAT 2015: Regulatory Sequence Analysis Tools JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gkv362 DO - 10.1093/nar/gkv362 ID - Medina-Rivera2015 ER - TY - JOUR AU - Gupta, S. AU - Stamatoyannopoulos, J. A. AU - Bailey, T. L. AU - Noble, W. S. PY - 2007 DA - 2007// TI - Quantifying similarity between motifs JO - Genome Biol VL - 8 UR - https://doi.org/10.1186/gb-2007-8-2-r24 DO - 10.1186/gb-2007-8-2-r24 ID - Gupta2007 ER - TY - JOUR AU - O’Malley, R. C. AU - Huang, S. S. AU - Song, L. AU - Lewsey, M. G. AU - Bartlett, A. AU - Nery, J. R. AU - Galli, M. AU - Gallavotti, A. AU - Ecker, J. R. PY - 2016 DA - 2016// TI - Cistrome and epicistrome features shape the regulatory dna landscape JO - Cell VL - 165 UR - https://doi.org/10.1016/j.cell.2016.04.038 DO - 10.1016/j.cell.2016.04.038 ID - O’Malley2016 ER - TY - JOUR AU - Turatsinze, J. V. AU - Thomas-Chollier, M. AU - Defrance, M. AU - van Helden, J. PY - 2008 DA - 2008// TI - Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules JO - Nat Protoc VL - 3 UR - https://doi.org/10.1038/nprot.2008.97 DO - 10.1038/nprot.2008.97 ID - Turatsinze2008 ER - TY - JOUR AU - Pundir, S. AU - Martin, M. J. AU - O’Donovan, C. PY - 2017 DA - 2017// TI - Uniprot protein knowledgebase JO - Methods Mol Biol VL - 1558 UR - https://doi.org/10.1007/978-1-4939-6783-4_2 DO - 10.1007/978-1-4939-6783-4_2 ID - Pundir2017 ER - TY - JOUR AU - Szymanski, J. AU - Levin, Y. AU - Savidor, A. AU - Breitel, D. AU - Chappell-Maor, L. AU - Heinig, U. AU - Topfer, N. AU - Aharoni, A. PY - 2017 DA - 2017// TI - Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development JO - Plant J VL - 90 UR - https://doi.org/10.1111/tpj.13490 DO - 10.1111/tpj.13490 ID - Szymanski2017 ER - TY - STD TI - Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. The string database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 2017;45(D1):362–8. ID - ref37 ER - TY - STD TI - Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A,Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. STRING v10: proteinŰprotein interaction networks, integrated over the tree of life. Nucleic Acids Res. 2015;43(Database issue): D447–52. ID - ref38 ER - TY - JOUR AU - Jacob, P. AU - Hirt, H. AU - Bendahmane, A. PY - 2017 DA - 2017// TI - The heat-shock protein/chaperone network and multiple stress resistance JO - Plant Biotechnol J VL - 15 UR - https://doi.org/10.1111/pbi.12659 DO - 10.1111/pbi.12659 ID - Jacob2017 ER - TY - JOUR AU - Barah, P. AU - Naika, M. B. N. AU - Jayavelu, N. D. AU - Sowdhamini, R. AU - Shameer, K. AU - Bones, A. M. PY - 2016 DA - 2016// TI - Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1463 DO - 10.1093/nar/gkv1463 ID - Barah2016 ER - TY - JOUR AU - Scharf, K. D. AU - Berberich, T. AU - Ebersberger, I. AU - Nover, L. PY - 2012 DA - 2012// TI - The plant heat stress transcription factor (hsf) family: Structure, function and evolution? JO - Biochimica et Biophysica Acta VL - 1819 UR - https://doi.org/10.1016/j.bbagrm.2011.10.002 DO - 10.1016/j.bbagrm.2011.10.002 ID - Scharf2012 ER - TY - JOUR AU - Krukenberg, K. A. AU - Street, T. O. AU - Lavery, L. A. AU - Agard, D. A. PY - 2011 DA - 2011// TI - Conformational dynamics of the molecular chaperone hsp90 JO - Q Rev Biophys VL - 44 UR - https://doi.org/10.1017/S0033583510000314 DO - 10.1017/S0033583510000314 ID - Krukenberg2011 ER - TY - JOUR AU - Mogk, A. AU - Kummer, E. AU - Bukau, B. PY - 2015 DA - 2015// TI - Cooperation of hsp70 and hsp100 chaperone machines in protein disaggregation JO - Front Mol Biosci VL - 2 UR - https://doi.org/10.3389/fmolb.2015.00022 DO - 10.3389/fmolb.2015.00022 ID - Mogk2015 ER - TY - JOUR AU - Guan, J. -. C. AU - Yeh, C. -. H. AU - Lin, Y. -. P. AU - Ke, Y. -. T. AU - Chen, M. -. T. AU - You, J. -. W. AU - Liu, Y. -. H. AU - Lu, C. -. A. AU - Wu, S. -. J. AU - Lin, C. -. Y. PY - 2010 DA - 2010// TI - A 9bp cis-element in the promoters of class i small heat shock protein genes on chromosome 3 in rice mediates l-azetidine-2-carboxylic acid and heat shock responses JO - J Exp Bot VL - 61 UR - https://doi.org/10.1093/jxb/erq230 DO - 10.1093/jxb/erq230 ID - Guan2010 ER - TY - CHAP AU - Komarnytsky, S. AU - Borisjuk, N. ED - Setlow, J. K. PY - 2003 DA - 2003// TI - Functional Analysis of Promoter Elements in Plants BT - Genetic Engineering: Principles and Methods PB - Springer CY - Boston ID - Komarnytsky2003 ER - TY - JOUR AU - Flagel, L. E. AU - Wendel, J. PY - 2009 DA - 2009// TI - Gene duplication and evolutionary novelty in plants JO - New Phytologist VL - 183 UR - https://doi.org/10.1111/j.1469-8137.2009.02923.x DO - 10.1111/j.1469-8137.2009.02923.x ID - Flagel2009 ER - TY - JOUR AU - Fragkostefanakis, S. AU - Mesihovic, A. AU - Simm, S. AU - Paupiere, M. J. AU - Hu, Y. AU - Paul, P. AU - Mishra, S. K. AU - Tschiersch, B. AU - Theres, K. AU - Bovy, A. AU - Schleiff, E. AU - Scharf, K. D. PY - 2016 DA - 2016// TI - Hsfa2 controls the activity of developmentally and stress-regulated heat stress protection mechanisms in tomato male reproductive tissues JO - Plant Physiol VL - 170 UR - https://doi.org/10.1104/pp.15.01913 DO - 10.1104/pp.15.01913 ID - Fragkostefanakis2016 ER - TY - JOUR AU - Echevarria-Zomeno, S. AU - Fernandez-Calvino, L. AU - Castro-Sanz, A. B. AU - Lopez, J. A. AU - Vazquez, J. AU - Castellano, M. M. PY - 2016 DA - 2016// TI - Dissecting the proteome dynamics of the early heat stress response leading to plant survival or death in arabidopsis JO - Plant Cell Environ VL - 39 UR - https://doi.org/10.1111/pce.12664 DO - 10.1111/pce.12664 ID - Echevarria-Zomeno2016 ER - TY - JOUR AU - Baurle, I. PY - 2016 DA - 2016// TI - Plant heat adaptation: priming in response to heat stress JO - F1000Res VL - 5 UR - https://doi.org/10.12688/f1000research.7526.1 DO - 10.12688/f1000research.7526.1 ID - Baurle2016 ER -