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Table 2 Species and total reads used to create the simulated multi-species metagenome. It shows the size of the original database, in reads and bases, the reads and bases used to create the metagenome, the size of the reported genome, and the depth calculated as the bases used divided by the genome size

From: CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes

Species

NCBI reference

Phylum/Class

Total reads

Total bases (Mbp)

Used reads

Used bases (Mpb)

Genome size (Mpb)

Depth(x)

Synechocystis

DRR106442

Cyanobacteria/Cyanobacteria

589,689

21.9

112,805

41.5

3.5

11.7

Dokdonella

SRR4217676

Proteobacteria/Gammaproteo-bacteria

376,022

80.5

376,022

80.5

4.6

17.41

Hymnobacter

SRR1334914

Bacteroidetes/ Cytophagia

2,917,298

958.5

37,599

12.3

5.0

2.4

Microbacteriaceae

SRR5493999

Actinobacteria/Actinobacteria

1,815,433

382.4

37,599

7.9

3.2

2.4

Rhizobium

SRR5165471

Proteobacteria/Alphaproteo-bacteria

1,152,754

242.2

37,599

7.9

4.5

1.7