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Table 2 Species and total reads used to create the simulated multi-species metagenome. It shows the size of the original database, in reads and bases, the reads and bases used to create the metagenome, the size of the reported genome, and the depth calculated as the bases used divided by the genome size

From: CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes

Species NCBI reference Phylum/Class Total reads Total bases (Mbp) Used reads Used bases (Mpb) Genome size (Mpb) Depth(x)
Synechocystis DRR106442 Cyanobacteria/Cyanobacteria 589,689 21.9 112,805 41.5 3.5 11.7
Dokdonella SRR4217676 Proteobacteria/Gammaproteo-bacteria 376,022 80.5 376,022 80.5 4.6 17.41
Hymnobacter SRR1334914 Bacteroidetes/ Cytophagia 2,917,298 958.5 37,599 12.3 5.0 2.4
Microbacteriaceae SRR5493999 Actinobacteria/Actinobacteria 1,815,433 382.4 37,599 7.9 3.2 2.4
Rhizobium SRR5165471 Proteobacteria/Alphaproteo-bacteria 1,152,754 242.2 37,599 7.9 4.5 1.7