Table 1 Known miRNAs in cucumber shoot tips
From: MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod
miRNA | Family membera | Dominant sequence (5p) | count(5p) | Dominant sequence (3p) | count(3p) | Previously identified | ||
|---|---|---|---|---|---|---|---|---|
csa-miR156 | 7 | TGACAGAAGAGAGTGAGCAC | 407,153 | TGCTCACTTCTCTTTCTGTCAGC | 128 | M | Y | X |
csa-miR157 | 4 | TTGACAGAAGATAGAGAGCAC | 2,059,132 | GCTCTCTATGCTTCTGTCATC | 158 | Y | X | |
csa-miR159 | 1 | – | – | ATTGGATTGAAGGGAGCTCC | 14 | M | Y | X |
csa-miR160 | 3 | TGCCTGGCTCCCTGTATGCCA | 11,461 | GCGTATGAGGAGCCAAGCATA | 24,040 | M | Y | X |
csa-miR162 | 1 | GGAGGCAGCGGTTCATCGACC | 318 | TCGATAAACCTCTGCATCCAG | 3306 | Y | X | |
csa-miR164 | 5 | TGGAGAAGCAGGGCACGTGCA | 253,447 | CACGTGCTCCCTTTCTCCAAC | 1649 | M | Y | X |
csa-miR166 | 8 | GGAATGTTGTCTGGCTCGAGG | 92,459 | TCGGACCAGGCTTCATTCCCC | 3,561,572 | M | Y | X |
csa-miR167 | 6 | TGAAGCTGCCAGCATGATCTA | 2,016,681 | GATCATATGGTAGCTTCACC | 34 | M | Y | X |
csa-miR168 | 2 | TCGCTTGGTGCAGGTCGGGAA | 172,731 | TCCCGCCTTGCATCAACTGAA | 17,238 | M | Y | X |
csa-miR169 | 12 | AAGCCAAGGATGAATTGCCGG | 35,494 | GGCAATTCCATTCTTGGCTAAG | 511 | M | Y | X |
csa-miR171 | 7 | TATTGGTCCGGTTCACTCAGA | 1589 | TGATTGAGCCGCGCCAATATC | 4086 | M | Y | X |
csa-miR172 | 5 | GCGGCATCATCAAGATTCACA | 3255 | AGAATCTTGATGATGCTGCAT | 132,778 | M | Y | X |
csa-miR390 | 4 | AAGCTCAGGAGGGATAGCGCC | 174,310 | CGCTATCCATCCTGAGTTTCA | 1220 | M | Y | X |
csa-miR393 | 3 | TCCAAAGGGATCGCATTGATC | 146 | ATCGTGCGATCCCTTAGGAAT | 11 | M | Y | X |
csa-miR394 | 2 | TTGGCATTCTGTCCACCTCC | 1749 | AGGTGGGCATACTGCCAATTG | 11 | Y | X | |
csa-miR395 | 4 | GTTCCCTTCCAAACACTTCAGA | 1 | TGAAGTGTTTGGGGGAACTC | 33 | X | ||
csa-miR396 | 5 | TTCCACAGCTTTCTTGAACTT | 223 | GCTCAAGATAGCTGTGGGAAA | 1433 | M | Y | X |
csa-miR397 | 1 | TCATTGAGTGCAGCGTTGATG | 188 | – | – | M | Y | X |
csa-miR398 | 1 | GAGTGAACCTGAGAACACAAGA | 15,821 | TTGTGTTCTCAGGTCACCCCT | 105 | M | Y | X |
csa-miR399 | 6 | GGGCGGATCTTTTTTGGCAGG | 239 | TGCCAAAAGAGACTTGCCCTG | 6739 | M | Y | X |
csa-miR408 | 1 | GCGGGGAACAGACAGAGCATG | 2242 | ATGCACTGCCTCTTCCCTGGC | 352 | M | Y | X |
csa-miR477 | 2 | TTCTCTCCCTCAAGGGCTTCGA | 324 | GAAGCCCACGAGGAGGGGATG | 228 | Y | ||
csa-miR530 | 2 | TGCATTTGCACCTACACCTTC | 3949 | – | – | Y | X | |
csa-miR827 | 1 | – | – | TTAGATGACCATCAACGAACG | 90 | M | Y | X |
csa-miR860 | 1 | – | – | TCAAAGATTGGACAAAATTAT | 12 | |||
csa-miR1038 | 1 | CAATGGTGGAATCGATCAGGC | 7 | – | – | |||
csa-miR1041 | 5 | – | – | TTTGTACGGGTGAGAGTGGTCAG | 28 | |||
csa-miR1044 | 3 | – | – | TTGAATAATGCATATTTTTTT | 7 | |||
csa-miR1120 | 1 | TAAGTATAAGATCGTTTAGAC | 14 | – | – | |||
csa-miR1886 | 1 | – | – | TGAAGAAGTAGATGAAGAGTC | 170 | |||
csa-miR1888 | 1 | TTATTAAGATTGTTTGAAGAA | 7 | – | – | |||
csa-miR2111 | 2 | TAATCTGCATCCTGAGGTTTA | 14,800 | GTCCTTGGGATGCAGATTATC | 39 | Y | X | |
csa-miR2628 | 1 | CTGAAAGAGAAGATGAATAA | 14 | – | – | |||
csa-miR2950 | 1 | TTCCATCTCTTGCACACTGGA | 6356 | TGGTGTGCATGAGATGGAATA | 14,275 | M | Y | X |
csa-miR3512 | 1 | – | – | TCACAAATGAAGACAATAGA | 32 | |||
csa-miR3704 | 1 | – | – | GGTGTACGGTGGAGTGGAAAATA | 26 | |||
csa-miR4234 | 1 | – | – | CAAATTAAAATCGTGGGCAT | 8 | |||
csa-miR4249 | 3 | – | – | TGAATTTGGAGAAGGAGAGTA | 18 | |||
csa-miR4383 | 1 | TATTGGAGCATCAGTGAAACGTC | 234 | – | – | |||
csa-miR4414 | 1 | AGCTGCTGACTCGTTGGCTCA | 716,542 | AACCAACGATGCAGGAGCCAA | 123 | X | ||
csa-miR5041 | 1 | CTTAGAGCAGATGAAGATGAA | 20 | – | – | |||
csa-miR5083 | 1 | AGACTACAATTATCTGATCA | 1274 | – | – | |||
csa-miR5225 | 1 | CCGCAGGAGAGATGACACCCAC | 14 | – | – | |||
csa-miR5242 | 1 | TTGTAGAAATCAAAGATGACA | 7 | – | – | |||
csa-miR5337 | 1 | TTAGGAACGGTAGCAATTTGA | 16 | – | – | |||
csa-miR5532 | 1 | TGGAATATATGACAAAGGTGG | 59 | – | – | |||
csa-miR5667 | 1 | AAAAGAGATCAAATGGATGCC | 13 | – | – | |||
csa-miR5671 | 1 | – | – | TATGGTAGTAGACATCGGGTGAC | 11 | |||
csa-miR5747 | 1 | TTAGAATACTCATACATACATTA | 8 | – | – | |||
csa-miR5751 | 1 | TTGATGTTGATCAATGGATATTT | 174 | – | – | |||
csa-miR5760 | 1 | – | – | TGCTTTAGGATTTGTTTAGGAT | 6 | |||
csa-miR5788 | 2 | – | – | TGGATGTGAAGACAGCTAGTA | 53 | |||
csa-miR6182 | 1 | TGTAGTTGATGGATGGATGCTTT | 12 | – | – | |||
csa-miR6257 | 1 | – | – | TCTTAACTAGTTGAATTATGT | 9 | |||
csa-miR6300 | 1 | – | – | GTCGTTGTAGTATAGTGGTA | 9345 | |||
csa-miR6421 | 1 | TACGATGAGATTGTAAGGGAG | 8 | – | – | |||
csa-miR6426 | 5 | – | – | GTAGAGACATGGAAGTGGAGACA | 252 | |||
csa-miR6440 | 1 | GAGTTGATCGAATTTCGTAGTTT | 14 | – | – | |||
csa-miR7129 | 13 | TCAAATCTAAACGATCGTTTTTC | 137 | – | – | |||
csa-miR7499 | 1 | TATATTTTCGGGTTATTTGGGTT | 8 | – | – | |||
csa-miR7741 | 1 | – | – | TGTTATTGTGGAAGTTCTTGA | 1286 | |||
csa-miR8125 | 1 | CAGGAGAAGAATGTGAAAAGGTA | 64 | – | – | |||
csa-miR8608 | 1 | TTTCTACACGATCGTTTGACATG | 6 | – | – | |||
csa-miR8657 | 1 | – | – | TCGTAGAAATTGTAGAAGCAGGC | 15 | |||
csa-miR8693 | 2 | – | – | AGATGAAAGAGATAGATGAGCAT | 30 | |||
csa-miR9408 | 1 | CAACAATCGTCAGGATAGAAAAT | 56 | – | – | |||
csa-miR9759 | 1 | TATGAACCAAGGTAGAATTTAAA | 37 | – | – | |||
csa-miR9776 | 1 | – | – | TTCGGACGAGGATGTTAACGG | 12 | |||
Total | 164 | 5,992,813 | 3,781,493 | |||||