Table 2 Novel miRNAs harbouring both 5p and 3p sequences
From: MicroRNAs and their targets in cucumber shoot apices in response to temperature and photoperiod
miRNA | mfe | seq(5p) | count(5p) | seq(3p) | Count(3p) |
|---|---|---|---|---|---|
csa-novel-mir3 | − 24.2 | ATCAAGTCAGGATGGCCGAGT | 44 | TCAAGTTCTGGTCTTCGTGA | 16 |
csa-novel-mir7 | − 93.1 | TTCGACTGCCTATATCTTTCCTT | 5 | GGAATGATGTAGCATGAAAG | 3 |
csa-novel-mir12 | − 56.9 | TTTTTAACAGATTAATTGGACA | 2207 | ACCAAATTGATTTAAGAGGC | 8 |
csa-novel-mir13 | − 18.27 | TCGAACATAAAGGAACATGAGTT | 22 | CCATCATGGTTCTTTTGTTTGGAC | 2 |
csa-novel-mir29 | − 41.29 | AACTACTATTCATTTCAAAAT | 1 | TTGGAAATGAATAGTAGTTTA | 14 |
csa-novel-mir33 | − 47.8 | TACAAGTTATGACTTATGAGT | 3 | TCATAACTTGTAACTTGTCCG | 8 |
csa-novel-mir36 | −29.62 | TTTTTGTGATTCGTGGATTTTTC | 51 | AATATCCACGTATTGATGGAAATT | 1 |
csa-novel-mir42 | − 58.2 | TGAAGTATGAACTGAAAGGAA | 29 | CCTTTCAATTCATACTTATTT | 9 |
csa-novel-mir54 | − 45.1 | TCGGTGGTCGTGTGGTTTCAG | 22 | AATCACACAACCATCGATC | 1 |
csa-novel-mir62 | − 60.5 | CATGACCAAAATGCGAACTTA | 38 | AGTTTGTTTTTTGGTCATGTC | 1 |
csa-novel-mir63 | − 31.7 | TCTTTAATCAACTCAACCAAA | 1 | TGGTTGAGCTGATTTAAGGAT | 9 |
csa-novel-mir68 | − 40.3 | TTTAAAAACCATACCAGAATT | 6 | TTTTGGCATGGTTTTTAAACC | 1 |
csa-novel-mir75 | − 43.8 | CGGTGGAGCGATGTTCTTGGACT | 1 | TTCGAGAAGGGCTTGATTGGT | 14 |
csa-novel-mir89 | −42.51 | TTGCTGCTCATTCGTTAGTTC | 37 | TCTAACGATGTAGGAGCAATC | 238 |
csa-novel-mir104 | − 46.9 | TCGGACATCGGCGACTTGGAA | 51,816 | TTCCAAGTCCACCCATGCCCGC | 15,481 |
csa-novel-mir106 | − 149.6 | TAGCTGTTAAATATGAAGACGA | 32,337 | GTCTTCATATTTAACAGCTAAT | 37 |
csa-novel-mir113 | −41.1 | TCGCAGAAGAGATGGTGCCGT | 4628 | GGCATCATATCCTCTGCGCAA | 322 |
csa-novel-mir136 | − 66.54 | AGTCTACTGTTTCATTCTTGA | 3 | AAGAATGAAACAGTAGACTCA | 147 |
csa-novel-mir141 | − 21.9 | TTTGACACGAGCACCTGAAAAAT | 4188 | TTTTCGGTTTCTCGAGTTACGAAC | 3 |