Table 6 Characteristics of the SNPs located in genes involved in root development of guar
S. No. | SNP name | Gene name | SNP Allele | Position | Gene description | Gene function |
|---|---|---|---|---|---|---|
1 | OT3537 | KK1_009388/ LOC100798193 GLYMA_06G069600 | G/T | 594 | cellulose synthase A catalytic subunit 1 [UDP-forming] | Transportation of mannose, nucleotide-sugar transport |
2 | OT2789 | -do- | C/A | 898 | -do- | β (1,4) Mannan synthesis |
3 | OT2790 | -do- | C/A | 899 | -do- | -do- |
4 | OT2791 | -do- | T/C | 917 | -do- | -do- |
5 | OT2792 | -do- | A/G | 959 | -do- | -do- |
6 | OT2793 | -do- | T/C | 960 | -do- | -do- |
7 | OT2794 | -do- | G/T | 1322 | -do- | -do- |
8 | OT4846 | LOC100797597 GLYMA_03G217500 | T/A | 344 | cellulose synthase-like protein D5 | -do- |
9 | OT1382 | LR48_Vigan02g201500 | T/A | 901 | cellulose synthase A catalytic subunit 2 [UDP-forming]-like | -do- |
10 | OT3553 | LOC100789704 GLYMA_12G002500 | A/C | 1528 | receptor-like protein kinase HSL1-like isoform X1 | Regulation of root development |
11 | OT3554 | -do- | A/G | 3027 | -do- | -do- |
12 | OT3555 | -do- | A/G | 3037 | -do- | -do- |
13 | OT3861 | LOC100780184 GLYMA_08G111400 | A/G | 2864 | uncharacterized protein LOC100780184 | Root cell wall biosynthesis |
14 | OT3862 | -do- | A/G | 5661 | -do- | -do- |
15 | OT3863 | -do- | A/G | 7007 | -do- | -do- |
16 | OT4656 | LOC100795671 GLYMA_12G192000 | T/C | 2145 | cellulose synthase-like protein B3-like | Root hair morphogenesis |