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Table 1 Genes near to the most suggestive SNPs (P < 0.0001) for six reproductive traits

From: Novel insights into the genetic basis of buffalo reproductive performance

Traits SNP ID Chr Position(bp) Within Gene Nearst Gene
FCA AX-85104022 15 15,493,494 SESN3
  AX-85147160 15 15,464,584 SESN3
  AX-85066093 3 14,263,986 GPATCH4
SCA AX-85115405 3 14,360,109 IQGAP3
  AX-85098201 7 40,737,269 COL23A1
  AX-85077363 1 31,982,649 CADM2
  AX-85041155 1 31,452,080 CADM2
  AX-85178307 7 46,586,723 FSTL4
TCA AX-85178307 7 46,586,723 FSTL4
  AX-85097354 16 59,785,310 BRINP2
  AX-85109602 28 32,271,813 KCNMA1
  AX-85092311 18 46,969,939 TBCB
  AX-85115405 3 14,360,109 MEF2D
  AX-85160204 6 74,395,035 IGFBP7
  AX-85115163 19 21,212,867 NUFIP2
  AX-85128429 3 8,311,409 NDUFS2
  AX-85127260 28 32,296,913 KCNMA1
  AX-85060416 12 3,071,256 DIAPH3
NSC AX-85122558 2 54,971,771 KYNU
  AX-85080363 20 48,102,049 CDH10
  AX-85149823 27 41,131,140 THRB
  AX-85080722 2 55,117,009 KYNU
  AX-85118378 27 37,743,905 CSGALNACT1
  AX-85069249 28 32,035,318 ZNF503
  AX-85069116 20 47,969,440 CDH10
OD AX-85166811 5 2,459,053 TRHDE
  AX-85107057 5 2,430,266 TRHDE
  AX-85107924 5 2,493,145 TRHDE
  AX-85078259 5 2,531,719 TRHDE
  AX-85136537 5 2,378,071 TRHDE
  AX-85092056 5 2,670,570 TRHDE
  AX-85058327 4 89,251,931 HYAL4
  AX-85129886 5 5,220,162 KRR1
  AX-85080072 4 100,837,591 MTPN
CI AX-85097797 10 69,031,255 PELI2
  AX-85056150 12 70,335,740 SOX21
  AX-85091977 23 51,462,571 GMDS
  AX-85082041 6 5,090,318 PRDM5
  AX-85127260 28 32,296,913 KCNMA1
  AX-85154020 3 56,690,373 LMO4
  1. FCA Age at first calving, SCA Age at second calving, TCA Age at third calving, CI Calving interval, NSC The number of artificial insemination, OD The open days. Chr and Position were obtained based on the cattle genome (Bos taurus UMD3.1 assembly)