Table 2 Number of raw and trimmed reads, assembled contigs and putative antimicrobial peptides classified per species and the primer of choice
Species | Forward primer | Raw reads | Trimmed reads | Contigs | AMPs (on target) |
|---|---|---|---|---|---|
Pelophylax kl. esculentus | TP1 | 10.278 | 7.674 | 399 | 22 (5%) |
TP2 | 6.995 | 3.786 | |||
TP3 | 18.067 | 13.321 | |||
Pelophylax ridibundus | TP1 | 5.401 | 4.192 | 196 | 31 (15%) |
TP2 | 3.670 | 2.446 | |||
TP3 | 5.132 | 3.924 | |||
Rana arvalis | TP1 | 8.292 | 6.294 | 391 | 31 (8%) |
TP2 | 12.498 | 6.272 | |||
TP3 | 1.505 | 1.101 | |||
Rana dalmatina | TP1 | 4.404 | 2.697 | 275 | 20 (7%) |
TP3 | 17.884 | 9.748 | |||
Rana temporaria | TP1 | 6.751 | 4.164 | 187 | 23 (12%) |
Hyla arborea | TP4 | 11.161 | 4.690 | 448 | 1 (0.2%) |
Bombina variegata | TP5 | 8.333 | 4.807 | 577 | 0 |