Table 3 Identified putative AMP sequences with no significant identity to the known proteins, less than 80% identity to known AMP sequences or 100% identity to proteins stored at NCBI database with < 70% query cover and their physico-chemical characteristics
# | Sequence | Species | Charge | Ha |
|---|---|---|---|---|
No identity to proteins stored at NCBI nr database | ||||
1 | FLGALGNALSRVLGK | R. temporaria | +3 | 0.813 |
2 | FIGALVNALTRVLGK | R. temporaria | +3 | 1.213 |
3 | FIGALVHALTGILGK | R. temporaria | + 2 | 2.247 |
4 | LVPFIGRTLGGLLARFGK | R. temporaria | + 4 | 1.500 |
5 | VPQLCFKFQKVIYCEINRTLPNEA | R. dalmatina | + 2 | −0.625 |
6 | FSQLFFAWLLRLCRQ | P. kl. esculentus | +3 | 2.587 |
7 | GIVEAWPLR | P. ridibundus, R. dalmatina | + 1 | 1.133 |
8 | NNLRHIVAWCKNRNYSLAVCARFKPQ | R. temporaria | + 6 | −1.612 |
9 | NLLGFLQGAKDILKECEADNYQGWLCESYKPQ | R. dalmatina | −1 | −1.250 |
10 | FLPLVLGKTHSEQAEILSWKSSNVEYHLPKCTTDV | P. ridibundus, R. dalmatina | 0 | −0.763 |
11 | FLPLIAGLWVNCSANNPKMLKLWK | P. kl. esculentus | + 4 | 1.363 |
12 | FLPICDKSALRFVGKV | P. ridibundus | +3 | 0.494 |
13 | EMPMKKKEETIQKKGMLKWKTIFTSHCWSFE | P. ridibundus | + 4 | −1.835 |
14 | RGLLDPITGLVGGLLR | H. arborea | + 2 | 1.213 |
< 80% identity to proteins stored at NCBI database | ||||
15 | FLGFVGQALNALLGKLGK | R. dalmatina | +3 | 1.550 |
16 | FLPAIAGILSQIFGK | P. kl. esculentus | + 2 | 2.540 |
17 | FFPAFLKVAAKVVPSIICSITKNVET | P. kl. esculentus | +3 | 0.573 |
18 | IVPILLGVVPQLVCAITKKC | R. dalmatina, R. temporaria | +3 | 1.675 |
19 | IIPLLLGKVVCAITKKC | R. dalmatina | + 4 | 1.271 |
20 | LVPMFLSKLICFITKKC | R. temporaria | + 4 | 1.918 |
21 | GLEVLGKILSGILGK | R. dalmatina, Rana arvalis | + 2 | 1.220 |
22 | LLGAALSALSSVIPSVISWFQKG | Rana arvalis | + 2 | 1.670 |
23 | LANRAARNTSQNVLNAITCTL | R. dalmatina | +3 | −1.662 |
24 | ADFLDKLRNFAAKNLQNKASL | P. ridibundus | +3 | −1.595 |
25 | EMLRKKEETIQKKGMLKWKNDFYQSLLEF | P. ridibundus | +3 | −1.779 |
100% identity to proteins stored at NCBI database with < 70% query cover | ||||
26 | QKTYNRRPPGWSLYVFHQQISNLELEVI | P. kl. esculentus | + 2 | −0.654 |
27 | FVPLLVSKLVCVVTKNVRIWKLELEII | Rana arvalis | +3 | 1.663 |
28 | FVPLLVSKLVCVVTKNVRTLET | Rana arvalis | +3 | 0.455 |
29 | FLPIVTNLLLRFVG | R. dalmatina | + 2 | 3.729 |