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Table 1 Summary of transcriptome data obtained from Ilex paraguariensis leaves, root and seedlings

From: Yerba mate (Ilex paraguariensis, A. St.-Hil.) de novo transcriptome assembly based on tissue specific genomic expression profiles

Total N° of contigs

470,638

Mean contig length (bp)

374

Minimum contig length (bp)

101

Maximum contig length (bp)

10.640

Contig N50 (bp)

766

Contig N80 (bp)

1750

Contig N90 (bp)

2260

Total bases

176,377,000

Standard Deviation of contig length (bp)

490.66

Unigenes > 200 bp

193,897

Unigenes > 500 bp

87,323

Mean unigen length

927 bp

Median unigen length

731 bp

Unigenes with orthologue in DBs

119,880

Unigenes in SwissProt Database

67,915

Unigenes in TrEMBL Database

51,965

  1. † N50 value is defined as the contig length where half the assembly is represented by contigs of this size or longer; the N80 value is defined as the contig length where 80 % of the assembly is represented by contigs of this size or longer; N90 value is defined as the contig length where 90 % of the assembly is represented by contigs of this size or longer