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Table 1 Summary of transcriptome data obtained from Ilex paraguariensis leaves, root and seedlings

From: Yerba mate (Ilex paraguariensis, A. St.-Hil.) de novo transcriptome assembly based on tissue specific genomic expression profiles

Total N° of contigs 470,638
Mean contig length (bp) 374
Minimum contig length (bp) 101
Maximum contig length (bp) 10.640
Contig N50 (bp) 766
Contig N80 (bp) 1750
Contig N90 (bp) 2260
Total bases 176,377,000
Standard Deviation of contig length (bp) 490.66
Unigenes > 200 bp 193,897
Unigenes > 500 bp 87,323
Mean unigen length 927 bp
Median unigen length 731 bp
Unigenes with orthologue in DBs 119,880
Unigenes in SwissProt Database 67,915
Unigenes in TrEMBL Database 51,965
  1. † N50 value is defined as the contig length where half the assembly is represented by contigs of this size or longer; the N80 value is defined as the contig length where 80 % of the assembly is represented by contigs of this size or longer; N90 value is defined as the contig length where 90 % of the assembly is represented by contigs of this size or longer