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Table 4 SNP frequency in housekeeping genes in A. flavus

From: Do environmentally induced DNA variations mediate adaptation in Aspergillus flavus exposed to chromium stress in tannery sludge?

Gene ID NRRL3357 Gene ID TERIBR1 Annotation Gene length (nucl) change in nucl change in aa status of SNPs
AFL2T_10032 g899 Calmodulin 4047 0 0 0
AFL2T_10117 g962 RPL5 (ribosomal protein) 1071 0 0 0
AFL2T_03358 g2143 Polyketide Synthase Acetate 1692 0 0 0
AFL2T_03019 g2421 Chitin Synthase 1 2655 0 0 0
AFL2T_08232 g3003 cyclophilin 522 0 0 0
AFL2T_08160 g3065 Ubiquitin-conjugating enzyme 450 0 0 0
AFL2T_01340 g5399 Vacuolar protein sorting association protein 324 0 0 0
AFL2T_01191 g5533 Cytochrome oxidase 348 0 0 0
AFL2T_12005 g6415 Ubiquitin-conjugating enzyme 510 0 0 0
AFL2T_02547 g6955 Ubiquitin-conjugating enzyme 513 0 0 0
AFL2T_02762 g7132 L- Asparaginase 690 0 0 0
AFL2T_09767 g7323 ATP_D (ATP synthase subunit beta) 1821 0 0 0
AFL2T_06390 g8072 Polyketide Synthase Acetate 2529 0 0 0
AFL2T_09983 g10276 Ubiquitin-conjugating enzyme 501 0 0 0
AFL2T_09876 g10370 L- Asparaginase 1677 0 0 0
AFL2T_07389 g10698 Elongation Factor Alpha like protein 1185 0 0 0
AFL2T_06969 g3347 ATP_D (Atp synthase subunit beta) 1539 0 0 0
AFL2T_06937 g3377 Chitin Synthase 1 5283 0 0 0
AFL2T_05991 g6789 GAPDH/Glyceraldehyde 3-phosphate dehydrogenase 1524 0 0 0
AFL2T_02677 g7061 Vacuolar protein sorting association protein 1563 0 0 0
AFL2T_05240 g3927 cyclophilin 1122 0 0 0
AFL2T_02454 g5775 TBPI (tata box binding protein) 690 0 0 0
AFL2T_03769 g1786 Actin interacting protein 3 2931 0 0 0
AFL2T_05664 g6503 Histone 807 0 0 0
AFL2T_11201 g8361 Ubiquitin-conjugating enzyme 333 0 0 0
AFL2T_12447 g9127 Ubiquitin-conjugating enzyme 837 0 0 0
AFL2T_12048 g11077 DNA Topoisomerase II 1032 0 0 0
AFL2T_04711 g9681 Ubiquitin-conjugating enzyme 450 0 0 0
AFL2T_07021 g3301 Ubiquitin-conjugating enzyme 474 0 0 0
AFL2T_07052 g3271 Lactate Dehydrogenase A 1065 0 0 0
AFL2T_11998 g6422 Ubiquitin-conjugating enzyme 456 0 0 0
AFL2T_05713 g6542 Vacuolar protein sorting association protein 387 0 0 0
AFL2T_03033 g2409 Chitin Synthase 1 1671 0 0 0
AFL2T_08388 g2865 Vacuolar protein sorting association protein 2022 0 0 0
AFL2T_08078 g3130 Histone 429 0 0 0
AFL2T_05673 g6508 28 s rRNA 450 0 0 0
AFL2T_04621 g9757 cyclophilin 630 0 0 0
AFL2T_07907 g4829 Vacuolar protein sorting association protein 351 0 0 0
AFL2T_01105 g5607 Ubiquitin-conjugating enzyme 1167 0 0 0
AFL2T_09240 g6218 Ubiquitin-conjugating enzyme 558 0 0 0
AFL2T_09015 g9269 Polyketide Synthase Acetate 6828 0 0 0
AFL2T_10236 g1076 Vacuolar protein sorting association protein 2313 0 0 0
AFL2T_05795 g6613 28 s rRNA 1815 0 0 0
AFL2T_03329 g2169 Ubiquitin-conjugating enzyme 2631 0 0 0
AFL2T_09350 g6131 18 s rRNA 2382 0 0 0
AFL2T_00575 g419 Chitin Synthase 1 3588 C150T H50H sSNPs
AFL2T_00433 g530 Vacuolar protein sorting association protein 2562 C1483G P496A nsSNPs
AFL2T_02076 g8000 Elongation Factor Alpha like protein 3222 A890C K297Q nsSNPs
AFL2T_09781 g7310 Vacuolar protein sorting association protein 2925 T1645C S548S sSNPs
AFL2T_09150 g8774 Polyketide Synthase Acetate 7425 T5820C L1938 L sSNPs
AFL2T_06936 g3378 Chitin Synthase 1 5574 A315G, C2100T, A2841T G105G, D700D, I947I sSNPs
AFL2T_06204 g8236 Chitin Synthase 1 3315 C1668T L556 L sSNPs
AFL2T_02195 g6007 Vacuolar protein sorting association protein 4545 A2925G, C4044T E975E, F1348F sSNPs
AFL2T_08239 g2996 Calmodulin 5103 A260G, T2232C, C2757G D87G, T744 T, L919 L nsSNPs, sSNPs, sSNPs
AFL2T_07518 g5174 Polyketide Synthase Acetate 6366 G1575A, G3053A S525 N, S1018 N nsSNPs
AFL2T_00612 g388 ATP_D (Atp synthase subunit beta) 1671 A1515C A505A sSNPs
AFL2T_05167 g3861 Vacuolar protein sorting association protein 3528 G456 T, G807A G152G, T269 T sSNPs
AFL2T_04317 g9038 Vacuolar protein sorting association protein 1920 T1383C I461I sSNPs
AFL2T_12048 g6382 DNA Topoisomerase II 3183 T1871C V624A nsSNPs
AFL2T_12403 g9165 Polyketide Synthase Acetate 4944 T1265C, C2231T, Y2271G M422 T, T744I, X757K nsSNPs
AFL2T_08114 g3103 Elongation Factor Alpha like protein 1383 T273A I91I sSNPs
AFL2T_02416 g5810 Vacuolar protein sorting association protein 2124 C1606T L536 L sSNPs
AFL2T_06144 g8287 aflatoxin regulatory protein 945 C46T L16F nsSNPs
AFL2T_07648 g5058 Ubiquitin-conjugating enzyme 1278 T570C G190G sSNPs
AFL2T_03037 g2405 secretory lipase 1353 W1271A X424N nsSNPs
AFL2T_05603 g4255 Vacuolar protein sorting association protein 2757 C1164T, G1491 T, C1884T I388I, T497 T, I628I sSNPs
AFL2T_09157 g8767 Ras protein 6435 C1509T, A2193G, G2304A, T2358C, G3018C, G4056A S503S, S731S, L768 L, N786 N, T1006 T, P1352P sSNPs
AFL2T_12399 g9169 Chitin Synthase 1 3222 C1317G V439 V sSNPs
AFL2T_06989 g3329 Elongation Factor Alpha like protein 2583 T1461C T487 T sSNPs
AFL2T_11104 g8446 Polyketide Synthase Acetate 7482 T3962C, A5970G, A5981G M1320 T, I1990M, D1994G nsSNPs
AFL2T_01971 g7909 Vacuolar protein sorting association protein 5862 G281A, A2246T, A2316G, C2766T, T3135A R94K, N749I, S772S, I922I, D1045E nsSNPs, nsSNPs, sSNPs, sSNPs, nsSNPs
AFL2T_01302 g5433 Vacuolar protein sorting association protein 2457 C704T, T828C A235V, G276G nsSNPs
AFL2T_11645 g4481 ATP_D (Atp synthase subunit beta) 1116 T972C I324I sSNPs
AFL2T_04569 g9796 Elongation Factor Alpha like protein 2400 C546T, T1785C, T2253C D182D, L595 L, F751F sSNPs
AFL2T_05904 g6711 Elongation Factor Alpha like protein 2730 T146C, C1836T, G2002A, A2435G F49S, P612P, V668I, D812G nsSNPs, sSNPs, nsSNPs, nsSNPs
AFL2T_02030 g7958 Ubiquitin-conjugating enzyme 1176 T641C V214A nsSNPs
AFL2T_09952 g10303 TBPI (tata box binding protein) 1338 T789G Y263Y sSNPs
AFL2T_02696 g7079 Elongation Factor Alpha like protein 2169 T576C, A825T, G1332A, T1557C D192D, I275I, E444E, F519F sSNPs
AFL2T_12346 g8605 Elongation Factor Alpha like protein 2874 A1914G E638E sSNPs
AFL2T_10814 g1537 Ubiquitin-conjugating enzyme 708 C507T D169D sSNPs
AFL2T_07094 g3237 Polyketide Synthase Acetate 6606 T3478A, T4780C, G4927A, A5446G, G5677A, T5862C,T6264C C1160S, Y1594H, E1643K, N1816D, A1893T, S1954S, C2088C nsSNPs, nsSNPs, nsSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs
AFL2T_02027 g7956 Vacuolar protein sorting association protein 1044 T663C Y221Y sSNPs
AFL2T_06635 g3639 L- Asparaginase 1074 A257G, C663A D86G, N221 K nsSNPs
AFL2T_09646 g7430 Ubiquitin-conjugating enzyme 921 T6C, G36C S2S, A12A sSNPs
AFL2T_01296 g5440 Vacuolar protein sorting association protein 876 C93T, G369A T31 T, L123 L sSNPs
AFL2T_05777 g6597 Vacuolar protein sorting association protein 2058 T538C, G1317A, G1438A, G1938C Y180H, S439S, E480K, K646 N nsSNPs, sSNPs, nsSNPs, nsSNPs
AFL2T_08606 g2683 Chitin Synthase 1 5172 G3339A, G3618A, A3831G, G4764C, G4952A T1113 T, L1206 L, L1277 L, P1588P, R1651Q sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs
AFL2T_09101 g9340 Elongation Factor Alpha like protein 2859 C1173T, G1275A, T1895C, G1947A, A2172G, C2670T D391D, L425 L, V632A, R649R, V724 V sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs
AFL2T_08131 g3088 cyclophilin 486 C158T A53V nsSNPs
AFL2T_00781 g238 Polyketide Synthase Acetate 6951 G2689A, C3072T, A3121G, A3864G V897I, F1024F, F1041A, K1288 K nsSNPs, sSNPs, nsSNPs, nsSNPs
AFL2T_01027 g12 Vacuolar protein sorting association protein 732 K401C X134A nsSNPs
AFL2T_00198 g739 Ubiquitin-conjugating enzyme 3240 C849A, T852A, G1475C, T1905C, A2459G, G2659A F283 L, I284I, R492P, G635G, N820S, A887T nsSNPs, sSNPs, nsSNPs, sSNPs, nsSNPs, nsSNPs
AFL2T_11313 g4750 aflatoxin regulatory protein 1164 T208C, C889A, G922A S70P, E297E, G308R nsSNPs, sSNPs, nsSNPs
AFL2T_08488 g2771 Elongation Factor Alpha like protein 3249 G1398A, A1683A, G2161A, G2328A E466E, V561 V, A721T, Q776Q sSNPs, sSNPs, nsSNPs, sSNPs
AFL2T_07094 g10842 Polyketide Synthase Acetate 1455 G526A, T711C, T1113C, A295G A176T, S237S, L371 L nsSNPs, sSNPs, sSNPs
AFL2T_06011 g6804 Ubiquitin-conjugating enzyme 504 A210G P70P sSNPs
AFL2T_01283 g5448 Chitin Synthase 1 2589 T1072C, A1536G N358 N, K512 K sSNPs
AFL2T_02416 g10910 Vacuolar protein sorting association protein 370 A55T L18 L sSNPs
AFL2T_05917 g6723 Ubiquitin-conjugating enzyme 741 A567G K189 K sSNPs
AFL2T_11034 g8506 GAPDH/Glyceraldehyde 3-phosphate dehydrogenase 1077 C237T, C357A H79H, G119G sSNPs
AFL2T_02787 g7154 Cytochrome oxidase 1482 A849G, C857T, A1003T, E283E, T286I, T335F sSNPs, nsSNPs, nsSNPs
AFL2T_03260 g2222 secretory lipase 1365 C936T, G985A, T990C, G1286A, T1291C N312 N, G329R, T330 T, G429D, L431 L sSNPs, nsSNPs, sSNPs, nsSNPs, sSNPs
AFL2T_07361 g10719 Lactate Dehydrogenase A 933 G702C, C753T, G879A G234G, F251F, V293 V sSNPs
AFL2T_09556 g7507 Ras protein 1458 C565T, G681A, T771C, T1047A L189 L, T227 T, T257 T, P349P sSNPs
AFL2T_03516 g2002 Vacuolar protein sorting association protein 2853 A1176C, C1180T G392G, L394 L sSNPs
AFL2T_04629 g9750 Elongation Factor Alpha like protein 1443 T475G, C543T, G1185C, T1302C T181 T, V395 V, A434A sSNPs
AFL2T_01738 g8814 cyclophilin 1638 A501C, A513G, A522G, A624G, T1011C, A1043G, T1176C V167 V, E171E, V174 V, E208E, A337A, K348R, L392 L sSNPs, sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs, sSNPs
AFL2T_04801 g9604 Cytochrome oxidase 555 T207A, T463G G69G, F155C sSNPs, nsSNPs
AFL2T_12397 g9171 Vacuolar protein sorting association protein 1758 T1659C G553G sSNPs
AFL2T_08911 g9862 Polyketide Synthase Acetate 7170 T3097C, A3519C, G3689A, A3761T W1033R, T1173 T, R1230Q, Y1254F nsSNPs, sSNPs, nsSNPs, nsSNPs
AFL2T_00897 g134 cyclophilin 1893 G616 T, C855T, T1191C, A1222G V206 L, F285F, Y397Y, T408A nsSNPs, sSNPs, sSNPs, nsSNPs
AFL2T_04106 g10177 cyclophilin 642 A72T T24 T sSNPs
AFL2T_06925 g3387 Cytochrome oxidase 348 C63A V21 V sSNPs
AFL2T_07038 g3286 Chitin Synthase 1 2076 G1794A T598 T sSNPs
AFL2T_08473 g2782 cyclophilin 498 C320G T107 T sSNPs
AFL2T_01646 g2579 secretory lipase 909 C10T, T309C, G509C, C646T L4L, H103H, R170P, L216 L sSNPs, sSNPs, nsSNPs, sSNPs
AFL2T_03998 g10190 Histone 768 C96T, A255G, C391T F32F, S85S, P131S sSNPs, sSNPs, nsSNPs
AFL2T_07224 g5682 aflatoxin regulatory protein 1218 C318G, G408C, G552 T, C581T, A794G, A979G, G1075A, C1137T T106 T, P136P, S184S, A194V, Y265C, S327G, V359 M, S379S sSNPs, sSNPs, sSNPs, nsSNPs, nsSNPs, nsSNPs, nsSNPs, sSNPs
AFL2T_00797 g223 L- Asparaginase 1137 T426C, T693C, G831C, C855T, T858C G142G, G231G, Q277H, I285I, D286D sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs
AFL2T_08030 g3169 secretory lipase 1269 A642G, A795G, T903C, A904G, A913G, T927C, T933C, T963C, C1140T A214A, L265 L, Y301Y, N302D, I305V, D309D, F311F, N321 N, G380G sSNPs, sSNPs, sSNPs, sSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs
AFL2T_08467 g2788 cyclophilin 1641 T83C, C408A, G610A, G655A, T666C, C690T, T750A, A789G V28A, L136 L, A204T, A219T, F222F, Y230Y, T250 T, E263E nsSNPs, sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs
AFL2T_04948 g9453 Polyketide Synthase Acetate 1977 C1314G, T1444C, G1519A, A1590G, C1767A, C1854T, G1962A R438R, W482R, V507I, L530 L, I589I, N618 N, R654R sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs
AFL2T_07791 g4925 Vacuolar protein sorting association protein 3813 G39A, C213G, G234A, A291G, C354T L13 L, S71S, Q78Q, E97E, H118H sSNPs
AFL2T_12205 g8728 secretory lipase 939 T25C, G182A, T380C, C435T, T699C, T714G, G768A, G828A L8L, S61 N, I127T, S145S, I233I, L238 L, P256P, A276A sSNPs, nsSNPs, nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs, sSNPs
AFL2T_01987 g7921 cyclophilin 537 A504G ,K168 K sSNPs
AFL2T_05263 g3947 Vacuolar protein sorting association protein 891 G301A, G401A, C558T, C654T, T749G, A750G, A775G A101T, G134D, D186D, I218I, I250R, I250R, M259 V nsSNPs, nsSNPs, sSNPs, sSNPs, nsSNPs, nsSNPs, nsSNPs
AFL2T_01745 g8808 GAPDH/Glyceraldehyde 3-phosphate dehydrogenase 1041 C192G, T222C, C345T, C348T, C393T, T474C D64E, I74I,G115G, A116A, F113F, A158A nsSNPs, sSNPs, sSNPs, sSNPs, sSNPs, sSNPs
AFL2T_04609 g9767 RPL5 (ribosomal protein) 531 C153T Y51Y sSNPs
  1. Frequency of SNPs = 0.9 SNPs/kb
  2. Frequency of sSNPs = 0.7 SNPs/kb
  3. Frequency of nsSNP = 0.4 SNPs/kb