Table 2 Genes evolving under branch-specific positive selection
From: Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.
Branch ID | Function of the gene product | ω 2 | p-value | COG | Localization |
|---|---|---|---|---|---|
0 | Transketolase (tktA) | 12.7 | 8·10−5 | G | CP |
0 | Putative aminotransferase protein | 8.8 | 2·10−5 | E | CP |
0 | Glycine cleavage system T protein (gcvT) | 26.1 | 5·10−5 | E | CP |
3 | Error-prone DNA polymerase (dnaE2) | 8.8 | 2·10−5 | F | CP |
3 | Metallo-dependent hydrolases | 104 | 2·10−6 | Q | CP |
4 | LysR-family transcriptional regulator | 507 | 6·10−22 | K | CP |
6 | Dyp-type peroxidase | 18 | 2·10−7 | P | CP |
6 | KipI family | 17 | 1·10−5 | E | CP |
6 | OmpA family transmembrane protein | 35 | 1·10−5 | M | OM |
13 | Alpha/beta hydrolase fold | 40 | 8·10−8 | S | CP |
23 | Inner membrane protein YqjD/ElaB | 1000 | 7·10−11 | S | NA |
48 | Glutamate synthase large subunit-like protein | 117 | 8·10−8 | E | NA |
N/A | Cytidylate kinase | 1000 | 1·10−5 | F | CP |
N/A | Flagellar hook protein (FlgE) | 4 | 1·10−6 | N | EC |
N/A | Phosphoenolpyruvate-protein kinase | 576 | 5·10−5 | G | CP |
N/A | Porin related exported protein | 7.5 | 1·10−5 | M | OM |
N/A | Penicillin-binding protein | 86 | 3·10−5 | M | CM |