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Table 1 Sequencing run summary of the in-house dataset

From: ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data

  Run 1 Run 2
Quality Low High
# Libraries 6 6
Clusters PF (%) 33.05 93.9
Q30 (%) 70.9 82.6
Total Reads 112993193 197600946
Valid Reads 70826303 (63%) 180526539 (91%)
# Cells (expected) 1800 1800
# Cells (ddSeeker) ≈3000 ≈3000
  1. Valid reads are reads with valid barcodes and UMI. Expected number of cells is based on cell capture efficiency, as declared by Bio-Rad