ncRNA | Description | FC rph-1 Δpnp double mutant vs rph-1 control |
---|---|---|
agrA | Inactive antisense sRNA | 6.1 |
arcZ | sRNA positive antisense regulator of rpoS; binds Hfq | 0.5 |
arrS | Antisense sRNA regulator of gadE and acid resistance; GadE-regulated | 0.4 |
csrB | CsrA-binding sRNA. antagonizing CsrA regulation; blocks the CsrA binding of hundreds of mRNAs | 7.0 |
cyaR | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent | 2.3 |
dsrA | Regulatory sRNA enhances translation of rpoS; component of acid resistance regulatory circuit; also antagonist of H-NS function by decreasing H-NS levels | 0.5 |
gadY | sRNA regulator of gadAB transcriptional activator GadX mRNA | 3.2 |
gcvB | GcvB sRNA gene divergent from gcvA; represses oppA, dppA, gltI and livJ expression; regulated by gcvA and gcvR; this is gcvB-L, terminated at T2, 90% of gcvB RNA is from gcvB-S, encoding a 134 nt RNA terminating at T1 | 5.3 |
glmY | sRNA activator of glmS mRNA, glmZ processing antagonist | 0.5 |
glmZ | sRNA antisense activator of glmS mRNA, Hfq-dependent | 6.1 |
micA | sRNA regulator of ompA, lamB, ompX and phoP, Hfq-dependent | 1.7 |
micF | Regulatory antisense sRNA affecting ompF expression; member of soxRS regulon | 1.7 |
omrA | sRNA downregulating OM proteins and curli; positively regulated by OmpR/EnvZ; binds Hfq | 0.3 |
omrB | sRNA downregulating OM proteins and curli; positively regulated by OmpR/EnvZ; binds Hfq | 0.2 |
psrD | Novel sRNA, function unknown | 3.7 |
rdlA | Antisense sRNA RdlA affects LdrA translation; proposed addiction module in LDR-A repeat, with toxic peptide LdrA | 0.5 |
rnpB | RNase P, M1 RNA enzyme component; involved in transfer RNA and 4.5S RNA-processing | 5.7 |
rprA | Positive regulatory antisense sRNA for rpoS translation | 0.6 |
rybB | sRNA effector of ompC and ompW mRNA instability; requires Hfq | 0.4 |
rydC | sRNA regulator of csgD and yejABEF | 2.3 |
ryeA | Novel sRNA, function unknown | 1.9 |
ryjB | Novel sRNA, function unknown | 2.1 |
sgrS | sRNA that destabilzes ptsG mRNA; regulated by sgrR | 9.8 |
sibA | Antisense sRNA regulator of toxic IbsA protein; in SIBa repeat | 26.0 |
sibB | Antisense sRNA regulator of toxic IbsB protein; in SIBb repeat | 3.2 |
sibC | Antisense sRNA regulator of toxic IbsC protein; in SIBc repeat | 11.3 |
sibD | Antisense sRNA regulator of toxic IbsD protein; in SIBd repeat | 13.0 |
sibE | Antisense sRNA regulator of toxic IbsE protein; in SIBe repeat | 1.9 |
sokB | Antisense sRNA blocking mokB, and hence hokB, translation | 0.5 |
sokX | Antisense sRNA, function unknown | 3.2 |
ssrA | tmRNA, 10Sa RNA; acts as tRNA-Ala and mRNA template for tagging proteins resulting from premature transcription termination for degradation, a process known as trans-translation | 1.4 |
symR | sRNA destabilizing divergent and overlapping symE mRNA | 0.5 |