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Table 5 The up- and down-regulated Genes associated with breast muscle development

From: RNA-Seq transcriptome analysis of breast muscle in Pekin ducks supplemented with the dietary probiotic Clostridium butyricum

Sequence ID

Gene symbol

Control_A

(FPKM)

Treatment_B

(FPKM)

Fold Change

(log10(B/A))

P-value

FDR

Up-regulated genes

c4419_g1

MGP

229.5

525.36

1.19

2.96E-02

1.00E-00

c68736_g3

FLNC

2.83

6.89

1.25

1.41E-02

1.00E-00

c70251_g1

FBXO_25

6.52

19.49

1.56

2.67E-04

3.03E-01

c4293_g1

LAMB4

0.05

0.30

1.43

3.33E-02

1.00E-00

c109044_g1

MGAT3

0.03

5.56

5.39

6.89E-10

1.96E-05

c69956_g1

ASIC4

1.89

5.43

1.47

9.85E-03

1.00E-00

Down-regulated genes

c56839_g3

MYL3

182.82

0.06

−10.2

1.66E-05

5.90E-02

c56924_g1

TPM3

3.62

0.05

−4.66

8.53E-04

5.53E-01

c53045_g1

PPP1R3B

4.01

0.61

−2.53

4.36E-02

1.00E-00

c64135_g1

DGKD

0.48

0.19

−1.01

3.77E-02

1.00E-00

c61682_g1

HSPB1

1549.43

546.55

−1.46

1.19E-02

1.00E-00

c54755_g1

HSPB7

279.72

22.95

−3.60

6.10E-05

1.45E-01

  1. MGP Matrix Gla protein, FLNC Filamin C, FBXO_25 F_box protein 25, LAMB4 Laminin subunit beta 4, MGAT3 Mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, ASIC4 Acid sensing ion channel subunit family member 4, MYL3 Myosin light chain 3, TPM3 tropomyosin 3, PPP1R3B Protein phosphatase 1 regulatory subunit 3B, DGKD Diacylglycerol kinase delta, HSPB1 Heat shock protein family B member 1, HSPB7 Heat shock protein family B member 1, FPKM Fragments per kilobase of transcript per million mapped reads