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Table 1 Examples of DNA variation databases

From: Systematics for types and effects of DNA variations

Database URL Reference
General variation databases
 Ensembl Variation Database [17]
ClinVar [18]
 Database of Short Genetic Variations (dbSNP) [19]
Exome and complete genome sequences
 ExAC [20]
 NHLBI Exome Sequencing Project (ESP) Exome Variant Server (EVS) [21]
 The 1000 Genomes Project [22]
 European Nucleotide Archive (ENA) [23]
Locus specific variation databases
 Leiden Open Variation Databases (LOVD) [24]
 Universal Mutation Database (UMD) [25]
 ImmunoDeficiency Variation Databases (IDbases) [26]
 The TP53 web site [48]
Allele frequency databases
 The ALlele FREquency Database (ALFRED) [27]
 FINDbase [28]
 Allele Frequency Net Database (AFND) [29]
 Allele Frequency Community (AFC) [30]
Cancer variation databases
 Catalogue of Somatic Mutations in Cancer (COSMIC) [31]
 The Cancer Genome Atlas (TCGA) [32]
 International Cancer Genome Consortium (ICGC) [33]
Ethnic/national databases
 Pakistan Genetic Mutation Database [34]
 The Singapore Human Mutation And Polymorphism Database [35]
Databases of genomic structural variations
 dbVar [36]
 Database of Genomic Variants (DGV) [37]
 Database of Genomic Variants archive (DGVa) [38]
 Mitelman Database of Chromosome Aberrations in Cancer  
 Human Polymorphic Inversion Database (InvFEST) [39]
Repeat databases
 The European database of L1-HS retrotransposon insertions in humans (euL1db) [40]
 L1base, LINE-1 insertions [41]
 SINEbase [42]
 Short Tandem Repeat DNA Internet DataBase (STRBase) [43]
Methylation databases
 Methylation Bank (MethBank) [49]
 NGSmethDB [44]
miRNA target databases
 Polymorphism in microRNAs and their TargetSites (PolymiRTS) [45]
 Somatic mutations altering microRNA-ceRNA interactions (SomamiR DB) [46]
DNA loop database
 R-loop DB [47]