Table 5 The proteins and hypothetical proteins produced by spliced transcripts
From: Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus
Transcript | Host protein length (aa) | Spliced protein length (aa) | Intron position | Splice donor | Splice acceptor |
|---|---|---|---|---|---|
ORF5–4-SP | ORF4: 452 | 452 | 5’ UTR | 4141 | 2783 |
ORF12–13-SP | ORF12: 661 | 233 | in frame, 5’truncated | 16,214 | 17,088 |
ORF24-SP | ORF24: 269 | 137 | in frame | 44,021 | 43,286 |
ORF42/45-SP-2 | ORF42/45: 747 | 380 | in frame, 5’truncated | 82,593 | 78,969 |
ORF50D | ORF50: 435 | – | – | – | – |
NTO1v1 (ORF63-SP-1) | ORF63: 278 | 278 | 5’ UTR | 110,581 | 111,417 |
ORF63-SP-2-C | ORF63: 278 | 278 | 5’ UTR | 110,581 | 111,417 |
ORF67-SP | 354 | 311 | in frame, 5’truncated | 114,496 | 115,559 |