Fig. 2

Taxonomy and Identity Score analysis of the 84 Pectobacterium genomes. a Maximum likelihood tree based on SNP data for the 84 Pectobacterium genomes including 56 P. carotovorum (that is 9 Pcc, 29 Pcb, 15 Pco, and 3 Pca genomes), 6 P. parmentieri, 10 P. atrosepticum, 4 P. polaris, and 8 Candidatus P. maceratum genomes, with 3 Dickeya genomes (D. paradisiaca Ech 703, D. zeae Ech586, and D. dadantii 3937) as the outgroup. The tree was generated with 1000 bootstrap replicates. The strains with red letters are the newly sequenced Pectobacterium strains in this study and the three P. carotovorum strains with green letters are the apparently misnamed strains detailed in the text. b Heat map (color code in the ramp, above) of identity scores based on pairwise comparison of these 84 Pectobacterium genomes and 3 Dickeya genomes