Skip to main content

Table 4 Heterozygosity and homozygosity within the CL-SL and VL-SL genomes

From: Genomic insights into virulence mechanisms of Leishmania donovani: evidence from an atypical strain

Isolate

Ho

He

Total SNPs

F (inbreeding coefficient)

VL38

26,663

57,592

84,255

−1.28637

L2331

38,248

58,153

96,401

−1.21113

VL28

13,098

24,524

47,622

−1.10192

R7

39,283

41,672

80,955

−0.77418

R5

44,411

40,095

84,506

−0.65821

L2343

56,029

6051

62,080

0.74412

L2339

57,733

4071

61,804

0.83690

L2372

52,717

2273

54,990

0.90426

  1. Heterozygosity and homozygosity identified within the 8 isolate genomes, among a total of 100,318 SNPs. Number of heterozygous SNPs (He), homozygous SNPs (Ho) and inbreeding coefficient (F) were calculated using VCFtools